Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0973
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7) 29 4.2
SB_12792| Best HMM Match : Pkinase (HMM E-Value=1.1e-09) 28 5.5
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09) 28 7.3
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_42189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1) 28 7.3
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11) 27 9.7
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_36231| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59) 27 9.7
>SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7)
Length = 712
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = -1
Query: 337 LRCVRFVHSAVRMRQASAVRVGRQSALQCTSQHN**HRVTQ*CSPRCCRHQATWAL 170
L C RFV A+R+R AV V SQ + + C P C TWAL
Sbjct: 598 LCCPRFVAWALRVR-LPAVTVPSHGPFVSASQLSPFRHMGTSCPPPSCPRSVTWAL 652
>SB_12792| Best HMM Match : Pkinase (HMM E-Value=1.1e-09)
Length = 196
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 227 VLLVMLASALQRALATDSNRGCLPHTHRGMY 319
+LLV+ A + + NRGCL TH +Y
Sbjct: 10 ILLVLEAGTMDLSTFLRKNRGCLSSTHLAVY 40
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 252 HCSALWRPTRTADACRIRTA 311
HC LW P T D+ R R A
Sbjct: 200 HCKQLWHPNLTCDSARYRRA 219
>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
Length = 590
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 ARFGDRLEPRMPAAYAPRNVQTAHNVA 339
A+F R PR+PA P+N+ + +VA
Sbjct: 246 AKFNSRKRPRVPAPPTPQNIPASAHVA 272
>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 ARFGDRLEPRMPAAYAPRNVQTAHNVA 339
A+F R PR+PA P+N+ + +VA
Sbjct: 483 AKFNSRKRPRVPAPPTPQNIPASAHVA 509
>SB_42189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 ARFGDRLEPRMPAAYAPRNVQTAHNVA 339
A+F R PR+PA P+N+ + +VA
Sbjct: 381 AKFNSRKRPRVPAPPTPQNIPASAHVA 407
>SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 ARFGDRLEPRMPAAYAPRNVQTAHNVA 339
A+F R PR+PA P+N+ + +VA
Sbjct: 336 AKFNSRKRPRVPAPPTPQNIPASAHVA 362
>SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 151 HGDSGS*GPRWPDGDSSGANTTE*RGATSYAG 246
+GD+G+ GP P GD+ T +G T G
Sbjct: 126 NGDTGATGPTGPKGDTGATGPTGPKGDTGATG 157
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 GDSGS*GPRWPDGDSSGANTTE*RGATSYAG 246
GD+G+ GP P GD+ T +G T G
Sbjct: 7 GDTGATGPTGPKGDTGATGPTGPKGDTGATG 37
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 GDSGS*GPRWPDGDSSGANTTE*RGATSYAG 246
GD+G+ GP P GD+ T +G T G
Sbjct: 61 GDTGATGPTGPKGDTGATGPTGPKGDTGATG 91
>SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)
Length = 567
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 ARFGDRLEPRMPAAYAPRNVQTAHNVA 339
A+F R PR+PA P+N+ + +VA
Sbjct: 485 AKFNSRKRPRVPAPPTPQNIPASAHVA 511
>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
Length = 1170
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 ARFGDRLEPRMPAAYAPRNVQTAHNVA 339
A+F R PR+PA P+N+ + +VA
Sbjct: 275 AKFNSRERPRVPAPPTPQNIPASAHVA 301
>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 294 CRIRTAECTNRTQRSRD*LRKCVISRI*RRKC 389
C+++T +C +T++S+ RKC ++ RKC
Sbjct: 120 CKVQTCKCKVQTRKSKKQTRKC---KVQTRKC 148
>SB_36231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 364 MTHFRSQSLLRCVRFVHSAVRMRQASAVRVGRQSALQCT 248
M H QS +RC+ F+ V R + V +S L C+
Sbjct: 1 MAHLPLQSNMRCIPFLEMLVSQRNSKRSGVEPRSQLYCS 39
>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
Length = 341
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 294 CRIRTAECTNRTQRSRD*LRKCVISRI*RRKC 389
C+++T +C +T++S+ RKC ++ RKC
Sbjct: 120 CKVQTCKCKVQTRKSKKQTRKC---KVQTRKC 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,263,327
Number of Sequences: 59808
Number of extensions: 321379
Number of successful extensions: 950
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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