Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0973
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81509-4|CAB04152.2|  236|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z81509-4|CAB04152.2|  236|Caenorhabditis elegans Hypothetical
           protein F21A3.6 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 365 ITNMTKKMPQSKKTIHNQKQNHHPVDPPAQKLI 463
           I     K+ +  KT  ++K+N  PVDP A+K+I
Sbjct: 47  IVEKPAKVAEKPKTTSSEKENAVPVDPLARKII 79


>Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical
           protein F32A11.3 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 226 GATSYAG*CTAARFGDRLEPRMPAAYAPRNVQTAHNVAETDYENASYHEYDEENASIEE 402
           G + Y G     +F    +  +PA+YA +N  T  N A+T     +Y + ++E    E+
Sbjct: 221 GPSEYIGMSNDCKFIYDNQRSVPASYAQKNEYTLVNAAQTAAPVINYRQEEQEEHGGED 279


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 528 WKSSMSYCAFRDYEIFCTHFKPMSF 454
           W SS S  +F  ++IFC+ F P+SF
Sbjct: 132 WISSFSVSSFLVFQIFCSRF-PVSF 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,606
Number of Sequences: 27780
Number of extensions: 223778
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)