Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0973
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 127 LQVPRMCLHGDS 162
           L++PR CL GDS
Sbjct: 533 LKMPRYCLFGDS 544


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 319 QTAHNVAETDYENASYHEYDEENASIEENNTQ 414
           Q A N    D +NA+    D +NA+ +  N Q
Sbjct: 430 QNADN-QNADNQNANNQNADNQNANKQNGNRQ 460


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/36 (19%), Positives = 19/36 (52%)
 Frame = +1

Query: 280 EPRMPAAYAPRNVQTAHNVAETDYENASYHEYDEEN 387
           EP++ ++ + + +   +N    +Y N +Y+  +  N
Sbjct: 78  EPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,802
Number of Sequences: 438
Number of extensions: 2765
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)