Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0973
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ...    29   2.0  
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa...    28   4.5  
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa...    28   4.5  
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG...    28   6.0  
At4g01535.1 68417.m00199 hypothetical protein                          27   7.9  
At2g05645.1 68415.m00604 hypothetical protein                          27   7.9  

>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain; this
           cDNA may contain an anomalously spliced intron...will
           require further examination.
          Length = 765

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 184 ATWALS--CQNLRVDTSVVLAKAEIISSELPPCCKTAFVNTAGLLPLIPI 41
           +TWA++  C +LR+D  +++    ++  ++   C    +  A +L +IP+
Sbjct: 536 STWAVASLCGSLRLDNVLMILAGALLEKQIVFVCSNLGILAASVLSIIPV 585


>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 277 LEPRMPAAYAPRNVQTAHNVAETDYENASYHEYDEENASIEENNT 411
           +E R P  Y  RN+   H     D +N SY E  +    I   NT
Sbjct: 420 VEDRQPQYYGSRNMLDHHRDMRLDIDNMSYEELLDLGERIGSVNT 464


>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 277 LEPRMPAAYAPRNVQTAHNVAETDYENASYHEYDEENASIEENNT 411
           +E R P  Y  RN+   H     D +N SY E  +    I   NT
Sbjct: 420 VEDRQPQYYGSRNMLDHHRDMRLDIDNMSYEELLDLGERIGSVNT 464


>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
           family protein similar to phosphatidylinositolglycan
           class N short form GB:BAA82620 [gi:5631308] [Mus
           musculus]
          Length = 921

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 349 YENASYHEYDEENASIEENNTQ 414
           +ENAS+H    + +S+ ENNT+
Sbjct: 734 FENASHHSSKVKESSLSENNTE 755


>At4g01535.1 68417.m00199 hypothetical protein
          Length = 137

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 417 RNRTITPSTHPHRSSSA*NEYRIFRN 494
           RNRT+ P THP    +    Y++  N
Sbjct: 103 RNRTVEPDTHPTSLRAGDGSYKVITN 128


>At2g05645.1 68415.m00604 hypothetical protein
          Length = 204

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 190 HQATWALSCQNLRVDTSVVLAKAEIISSELPPCCKTAFVNTAGLLPLIPINF 35
           H   W L   N+ V+   +   + II S     C ++ VNT  LL L  + F
Sbjct: 153 HGYNWKLFASNVFVEHLFLEDSSMIIKSMFSCGCSSSLVNTDALLLLYKLRF 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,572,908
Number of Sequences: 28952
Number of extensions: 201428
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)