Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0972
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   1.7  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    27   2.2  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   8.9  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 352  LEMCEFERCEVSDAISIWQQRAESD*KQVLNVLKNSDLIRDHY 480
            L  C+FE  +  + ISI+      D  +V  VL    +  DHY
Sbjct: 1100 LSSCKFEGYDPQNLISIYPPARFGDVTEVTKVLNRESVKLDHY 1142


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 402 LATARGV*LKTSFKCIKELGFDP*SLH*FSAYEVLG-LRARSSSRRVVEQRGDRH 563
           LA   G  L+T  KC+K++ FD       S   +   + A S  R+V+ Q GD H
Sbjct: 145 LANCNG--LRTITKCVKDVSFDEFRKDVISCSTIENKIMAISFCRKVLGQTGDGH 197


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 451 LIHLKLVFSQTPRAVARLI 395
           LIH+ L F Q PR +A +I
Sbjct: 46  LIHIPLSFLQQPRVIAEII 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,915
Number of Sequences: 5004
Number of extensions: 34624
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)