Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0972
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0095 + 15979884-15980234                                         33   0.18 
08_02_0979 - 23252004-23252038,23253874-23254624                       29   4.0  
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867...    28   5.2  
07_03_0682 + 20667365-20667655                                         27   9.2  

>01_04_0095 + 15979884-15980234
          Length = 116

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 580 CRCICPCRSPLCSTTRRLEDRARRPSTS 497
           CRC CP  SP+ S   R   RAR  STS
Sbjct: 30  CRCPCPGASPMASPCCRTRSRARTGSTS 57


>08_02_0979 - 23252004-23252038,23253874-23254624
          Length = 261

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 489 SAYEVLGLRARSSSRRVVEQRGDRHGHIQRH*PAACSAHALGW 617
           S+++ L LR  SSS  V    G+   +++R   AAC   A  W
Sbjct: 195 SSFQPLDLRPPSSSSSVAPSSGEATPYMRRSLDAACGGKAPRW 237


>03_05_0179 -
           21583234-21584336,21586274-21586358,21586665-21586713,
           21586801-21586874,21586958-21587050,21587120-21587174,
           21587348-21587421,21587702-21587814,21587911-21588168,
           21588915-21589012,21589139-21589256,21589754-21589848,
           21590001-21590159,21590336-21590525,21590881-21591021,
           21591142-21591176,21591659-21591699
          Length = 926

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 618 ATLKRGQSKQRANVVVYARA-DPPSARRPD 532
           A L+RG+ ++   VV  A A DPP+ +RPD
Sbjct: 180 AELRRGERRRDHEVVFAAAARDPPTLQRPD 209


>07_03_0682 + 20667365-20667655
          Length = 96

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 603 GQSKQRANVVVYARADPPSARRPDDLRTGREG 508
           GQS+ R   VV AR    S RR  + R GR+G
Sbjct: 22  GQSQTRRRPVVEARQGGGSRRRRTERRWGRDG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,844
Number of Sequences: 37544
Number of extensions: 200169
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)