Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0972
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)             35   0.047
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     29   2.3  

>SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)
          Length = 473

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 5   ASQQPVYLVRSYVRHLLSYFASLNLTFFVVLTEYTYSFIYNLIKHH 142
           + + P++ V S +R L  YF  LNLTFF+ + +     I  L+  H
Sbjct: 78  SGRYPIHTVFSVLRALADYFPQLNLTFFIQILDADPMAITELVSKH 123


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -3

Query: 565 PCRSPLCSTTRRLEDRARRPSTS*AEN*CSDHGSNPSSLIHLKLVFSQ-TPRAVARLILR 389
           P  SP  STT     R RR  +S ++   S   S  S  + L LV  + T   ++   L+
Sbjct: 629 PSASPQPSTTTEPGARKRRWGSSSSKKKTSVPISTESLKVSLTLVSKKKTSVPISTESLK 688

Query: 388 QKLRNVQIHTFQGTEALLVF 329
           + + +VQ+H+    EAL+ F
Sbjct: 689 ELIPDVQVHSTPAFEALMDF 708


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,268
Number of Sequences: 59808
Number of extensions: 245174
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)