Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0972
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +2

Query: 26  LVRSYVRHLLSYFASLNLTFFVVLTEYTYSFIYNLIKHH*RASVKKFLNLRSLFKFSENL 205
           L  S  R +L    ++++ FF +L  +  ++   L +H+    + + +N+RS  K + NL
Sbjct: 22  LALSAKRKVLLNPKTVSIYFFAILFTFLLAYHQRLGQHNNELHISRVVNMRSFVKEANNL 81


>U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical
           protein F09E5.7 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -3

Query: 439 KLVFSQTPRAVARLILRQKLRNVQIHTFQGTEALLVFIQVKNDARF*FLNDIMQKKLST- 263
           K++ + TP++VA+LIL  K ++ QI T    +      ++ ND    F N+ +Q  ++T 
Sbjct: 127 KILKNLTPKSVAKLILSNK-KSQQILTSDAVDNTFWKKRLNND----FGNETVQNTITTG 181

Query: 262 -KFY 254
            KFY
Sbjct: 182 RKFY 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,223,333
Number of Sequences: 27780
Number of extensions: 196579
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)