Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0971
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0419 - 3316866-3318172,3318249-3318360 29 2.4
02_05_0819 - 32014236-32016059 29 3.1
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 5.4
03_06_0422 + 33818887-33819996 28 5.4
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 28 7.2
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 28 7.2
05_06_0259 + 26733699-26733854,26733940-26734071,26734171-267343... 28 7.2
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 7.2
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 27 9.5
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 101 DSLPTASEPTASQPTASEPTASQP 172
+ PTA+EP P A EP A++P
Sbjct: 330 EETPTATEPEPEPPAAEEPPAAEP 353
>02_05_0819 - 32014236-32016059
Length = 607
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 625 ETERPQSCWRERRTRHVRTLERHKLRELRHNQRGRQR 515
+ E+P+ RE R +ER ++RE R +R R+R
Sbjct: 377 DLEQPREQRRESREEREARIERDRIREERRRERERER 413
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 625 ETERPQSCWRERRTRHVRTLERHKLRELRHNQRGRQRERAIGS 497
E ER + RER ER +LRE R +R R R+ S
Sbjct: 345 ERERDRERLRERERERELERERERLRERRMKERERDRKHPADS 387
>03_06_0422 + 33818887-33819996
Length = 369
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 634 LGSETERPQSCWRERRTRHVRTLERHKLRE-LRHNQRGRQRER 509
+G +++R + RERR R R ER + RE +R +R R+RER
Sbjct: 130 IGRDSDRDRE--RERRERE-RLRERERERERMRERERERRRER 169
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 598 RERRTRHVRTLERHKLRELRHNQRGRQRERA 506
RE R R + E+ +L E R ++ R+RERA
Sbjct: 532 REMRQREEKEREQRRLEEERELEKQRERERA 562
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 639 WDLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNG 514
W+ +L S AGG G + W +SCV S +TS+ + G
Sbjct: 37 WNSPAQLTGWS-AGGGDPCGAA--WMGVSCVGSAVTSISEFG 75
>05_06_0259 +
26733699-26733854,26733940-26734071,26734171-26734341,
26734419-26734445,26734550-26734757,26735160-26735241,
26735384-26735492,26735640-26735756,26735828-26736160
Length = 444
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 639 WDLAQRLRDHSLAGGSGVRGMSEHWSAISC 550
W R+ D S++GG + GM W A SC
Sbjct: 118 WLYVFRVDDLSVSGGGTIDGMGAEWWARSC 147
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 606 LAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGP 505
L+GGSG G +E WS+ S S T+ S P
Sbjct: 258 LSGGSGGGGAAEAWSSASASSPPTTTTASRRSLP 291
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 509 PLPLSPTLVMPELTQLMALQCSDMPRTPLPP 601
PLP PT+ +P L QL L +P P P
Sbjct: 71 PLPQLPTIQIPSLPQLPPLPTIQIPGLPTLP 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,183
Number of Sequences: 37544
Number of extensions: 127704
Number of successful extensions: 733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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