Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0971
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical pr... 33 0.23
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.92
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.92
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.92
AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical ... 30 1.6
AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical ... 29 2.8
AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical ... 29 2.8
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 3.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 3.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 3.7
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 27 8.6
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 27 8.6
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 8.6
AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical ... 27 8.6
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical
protein K09B11.5b protein.
Length = 525
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTASQ 184
T + P S+P SQP S+P SQP SQ
Sbjct: 468 TVKSPMTPPVSQPPVSQPPVSQPPVSQPPVSQ 499
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 104 SLPTASEPTASQPTASEPTASQPTASQ 184
S P S+P SQP S+P SQP SQ
Sbjct: 478 SQPPVSQPPVSQPPVSQPPVSQPPVSQ 504
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 104 SLPTASEPTASQPTASEPTASQPTASQ 184
S P S+P SQP S+P SQP Q
Sbjct: 483 SQPPVSQPPVSQPPVSQPPVSQPPVPQ 509
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTASQ 184
T + ++ + P SQP S+P SQP SQ
Sbjct: 463 TAKSHTVKSPMTPPVSQPPVSQPPVSQPPVSQ 494
>Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical
protein K09B11.5a protein.
Length = 589
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTASQ 184
T + P S+P SQP S+P SQP SQ
Sbjct: 532 TVKSPMTPPVSQPPVSQPPVSQPPVSQPPVSQ 563
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 104 SLPTASEPTASQPTASEPTASQPTASQ 184
S P S+P SQP S+P SQP SQ
Sbjct: 542 SQPPVSQPPVSQPPVSQPPVSQPPVSQ 568
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 104 SLPTASEPTASQPTASEPTASQPTASQ 184
S P S+P SQP S+P SQP Q
Sbjct: 547 SQPPVSQPPVSQPPVSQPPVSQPPVPQ 573
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTASQ 184
T + ++ + P SQP S+P SQP SQ
Sbjct: 527 TAKSHTVKSPMTPPVSQPPVSQPPVSQPPVSQ 558
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 104 SLPTASEPTASQPTASEPTASQPTAS 181
S PT S PT S PT P S PT S
Sbjct: 410 SPPTGSPPTGSPPTGRPPRGSPPTGS 435
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 98 TDSLPTASEPTASQPTASEPTASQPT 175
T S PT S PT P S PT S PT
Sbjct: 413 TGSPPTGSPPTGRPPRGSPPTGSPPT 438
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 110 PTASEPTASQPTASEPTASQPTAS 181
P S PT S PT S PT P S
Sbjct: 407 PRRSPPTGSPPTGSPPTGRPPRGS 430
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 104 SLPTASEPTASQPTASEPTASQPTAS 181
S PT S PT S PT P S PT S
Sbjct: 431 SPPTGSPPTGSPPTGRPPRGSPPTGS 456
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 98 TDSLPTASEPTASQPTASEPTASQPT 175
T S PT S PT P S PT S PT
Sbjct: 434 TGSPPTGSPPTGRPPRGSPPTGSPPT 459
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 110 PTASEPTASQPTASEPTASQPTAS 181
P S PT S PT S PT P S
Sbjct: 428 PRRSPPTGSPPTGSPPTGRPPRGS 451
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 104 SLPTASEPTASQPTASEPTASQPTAS 181
S PT S PT S PT P S PT S
Sbjct: 416 SPPTGSPPTGSPPTGRPPRGSPPTGS 441
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 98 TDSLPTASEPTASQPTASEPTASQPT 175
T S PT S PT P S PT S PT
Sbjct: 419 TGSPPTGSPPTGRPPRGSPPTGSPPT 444
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 110 PTASEPTASQPTASEPTASQPTAS 181
P S PT S PT S PT P S
Sbjct: 413 PRRSPPTGSPPTGSPPTGRPPRGS 436
>AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical
protein C41D11.6 protein.
Length = 852
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 345 GQAVNAAVDHSWQAVDAVKTVEAKL 419
G V AAVDH+ Q+ DA+ T+E ++
Sbjct: 515 GTFVPAAVDHAVQSTDAITTIECRI 539
>AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2a protein.
Length = 665
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTAS 166
TT + S T PT S+ T EPTAS
Sbjct: 187 TTTSTSTTTTETPTTSEATTHEPTAS 212
>AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2b protein.
Length = 634
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTAS 166
TT + S T PT S+ T EPTAS
Sbjct: 137 TTTSTSTTTTETPTTSEATTHEPTAS 162
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 183 CDAVGCDAVGSEAVGCEAVGSEAV 112
C+ GCD GSE V C V + V
Sbjct: 1083 CEDCGCDPTGSEDVSCNLVTGQCV 1106
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 183 CDAVGCDAVGSEAVGCEAVGSEAV 112
C+ GCD GSE V C V + V
Sbjct: 1083 CEDCGCDPTGSEDVSCNLVTGQCV 1106
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 183 CDAVGCDAVGSEAVGCEAVGSEAV 112
C+ GCD GSE V C V + V
Sbjct: 1083 CEDCGCDPTGSEDVSCNLVTGQCV 1106
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTAS 181
TT T T SE T + PT + T ++PT +
Sbjct: 242 TTTTTPATTTSETTTTTPTTTTQTTTKPTTT 272
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 92 TATDSLPTASEPTASQPTASEPTASQPTAS 181
T+T +LP+ + T ++ T S PT+ Q T +
Sbjct: 547 TSTTTLPSTTASTTTKTTTSTPTSPQTTTT 576
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 92 TATDSLPTASEPTASQPTASEPTASQPTAS 181
T+T +LP+ + T ++ T S PT+ Q T +
Sbjct: 388 TSTTTLPSTTASTTTKTTTSTPTSPQTTTT 417
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 612 HSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGP*AAWRPRG 481
+S G G S++W S S + GD+ G +W+P G
Sbjct: 261 NSWKGSGNSNGNSDNWGGSSGSGSNGGNDGDSNYGNEGSWKPSG 304
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 612 HSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGP*AAWRPRG 481
+S G G S++W S S + GD+ G +W+P G
Sbjct: 261 NSWKGSGNSNGNSDNWGGSSGSGSNGGNDGDSNYGNEGSWKPSG 304
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 92 TATDSLPTASEPTASQPTASEPTASQPTAS 181
T+T +LP+ + T ++ T S PT+ Q T +
Sbjct: 428 TSTTTLPSTTASTTTKTTTSTPTSPQTTTT 457
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTASQ 184
T T S T +PT S+ +E T S+P+ ++
Sbjct: 830 TEKTTSKTTTEKPTTSESATTETTTSEPSTTE 861
>AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical
protein C35A11.3 protein.
Length = 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTAS 181
TTAT S PT +++ P+ T + PT S
Sbjct: 52 TTATSSTPTTEIFSSNSPSTETTTCASPTTS 82
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 TTATDSLPTASEPTASQPTASEPTASQPTASQ 184
T++T S + PT S+PT TASQ TASQ
Sbjct: 282 TSSTSSPAPTNPPTTSRPT----TASQSTASQ 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,514,777
Number of Sequences: 27780
Number of extensions: 78351
Number of successful extensions: 633
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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