Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0971
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similari...    31   0.85 
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    29   2.0  
At4g11300.1 68417.m01826 expressed protein                             29   2.6  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    29   2.6  
At5g57370.1 68418.m07168 expressed protein low similarity to nuc...    28   4.5  
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ...    28   4.5  

>At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similarity
           to elicitor inducible beta-1,3-glucanase NtEIG-E76
           [Nicotiana tabacum] GI:11071974
          Length = 222

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 92  TATDSLPTASEPTASQPTASEPTASQPTA 178
           T T   PT   PT   PT   PT+  PT+
Sbjct: 121 TPTSGTPTTGTPTTGTPTTGTPTSGTPTS 149



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 92  TATDSLPTASEPTASQPTASEPTASQPTA 178
           T T   PT+  PT   PT   PT   PT+
Sbjct: 116 TPTTGTPTSGTPTTGTPTTGTPTTGTPTS 144



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 92  TATDSLPTASEPTASQPTASEPTASQPT 175
           T T   PT   PT+  PT   PT   PT
Sbjct: 111 TPTTGTPTTGTPTSGTPTTGTPTTGTPT 138



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 92  TATDSLPTASEPTASQPTASEPTASQPT 175
           +++   PT   PT   PT+  PT   PT
Sbjct: 106 SSSSGTPTTGTPTTGTPTSGTPTTGTPT 133



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 92  TATDSLPTASEPTASQPTASEPTASQP 172
           T T   PT   PT   PT+  PT+  P
Sbjct: 126 TPTTGTPTTGTPTTGTPTSGTPTSGFP 152


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 637 GLGSETERPQSCWRERRTRHVRTLERHKLRELRHNQ-RGRQRER 509
           G  S++E P     ER     +  ER + REL H Q R R R+R
Sbjct: 250 GRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDR 293


>At4g11300.1 68417.m01826 expressed protein
          Length = 371

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 609 SLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSG 508
           S  GGSG R  ++ WS+    S G +  G  G+G
Sbjct: 171 SSGGGSGRRSSTDQWSSFGRRSGGSSGGGGGGAG 204


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 625 ETERPQSCWRERRTRHVRTLERHKLRELRHNQRGRQRER 509
           E +R +   RER  +  R  ER ++ E R  +R  +RER
Sbjct: 379 EHDRERERQRERERQRARDRERERILERREKERQGERER 417


>At5g57370.1 68418.m07168 expressed protein low similarity to
           nucleic acid binding protein [Homo sapiens] GI:431953
          Length = 219

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 637 GLGSETERPQSCWRERRTRHVRTLERHKLRELRHNQRGRQRER 509
           GL ++  R ++     R RHVR+ ER++ R  R   R R R+R
Sbjct: 47  GLRNKKSRSRTPDHHARARHVRSPERYRSRS-RSIDRDRDRDR 88


>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
           domain, PF02731: SKIP/SNW domain found in chromatin
           proteins.
          Length = 613

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 637 GLGSETERPQSCWRERRTRHVRTLERHKLRELRHNQRGRQR 515
           G   E E PQ    ER  R    ++R K+RE R  +R R+R
Sbjct: 379 GREREREEPQETREEREKR----IQREKIREERRRERERER 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,355,762
Number of Sequences: 28952
Number of extensions: 76690
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)