Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0970
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 4.8
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 26 4.8
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 25 6.3
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 6.3
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 25 6.3
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 25 6.3
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 25 6.3
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 25 8.4
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 25 8.4
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 8.4
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 413 EDEESDVRERSLAARTG---SEERRRSK 487
E+E+SDV+ RS+ R G SE+ +R K
Sbjct: 173 EEEDSDVKGRSMVGRDGRYKSEDLKRRK 200
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 205 GCLSPQLNSNSEPQRIMMP 261
G LSP LNS + QRIM P
Sbjct: 173 GGLSPDLNSMDQIQRIMRP 191
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 366 FVEICSRYINEALERLKTKKVTSENDLSLL 455
+ E R NEA ERL T K +++D SL+
Sbjct: 216 YAEEVVRECNEAWERLITGKTDAKSDFSLV 245
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 174 YRPRRLGRPAGLSVATVE*QFRTATHHDAAKFALRNVAVLELK 302
Y+ R+ PAGL + +E Q++ +A + L N + E+K
Sbjct: 328 YQLRKYEPPAGLKIVDLERQWKDFLSEEANQSKLINTHMREIK 370
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 354 YSRIYSKAVSVCISNKAPLVLKLQRFVKQTLRHHDALRF*IA 229
Y IY K ++C++ K VL + F+K+ RF +A
Sbjct: 105 YKWIYRKDYNLCLNQKIAFVLVMLHFMKREYESIFVHRFSLA 146
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = -3
Query: 126 VPVLVSGVYHVLNEVLRDQLDW 61
+P+ V ++ ++NE ++ +DW
Sbjct: 487 IPIFVDKLHQLINETIKGNVDW 508
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 270 QTLRHHDALRF*IAIQLWRQTTQPDVQGDAADTFQRPSVNVVVELMRQV 124
Q HDA+ ++ WR P+ + D A F + N++ +R+V
Sbjct: 58 QATNLHDAVTIINEMRNWRDPNPPEEKSDRATIFLGYTSNLISSGVREV 106
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 381 SRYINEALERLKTKKVTSENDLSLLERVL 467
+RYI + +ER + +K SE+ LS L RVL
Sbjct: 27 NRYI-QTIERFQDEKSGSESVLSQLNRVL 54
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 410 AEDEESDVRERSLAARTGSEERRR 481
AED +VR R A + GSEE RR
Sbjct: 160 AEDLFYNVRSRKSALKNGSEEFRR 183
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 22 PILQPQTVKKYVAPIELVTEDFIKYMVDARD 114
P LQP ++++V + + +D IK+ + RD
Sbjct: 993 PHLQPIQIQEFVQTVLALNQDSIKFKLALRD 1023
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,255
Number of Sequences: 5004
Number of extensions: 45504
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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