Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0970
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0807 + 31870018-31870953                                         31   0.53 
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    29   2.1  
08_02_0012 - 11247424-11247702                                         28   4.9  
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306...    28   4.9  
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    27   8.6  
06_03_1255 + 28780181-28781172,28782065-28782932                       27   8.6  
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    27   8.6  

>02_05_0807 + 31870018-31870953
          Length = 311

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = -2

Query: 157 CECRCRTHEASPRSRLGR 104
           C  RC TH ASPRSR GR
Sbjct: 161 CMSRCGTHGASPRSRAGR 178


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -1

Query: 503 HYGGYLWIAFAPQNPFEQREIVL*RHFLRLQPFKRLIDITAANLNKEVHVIHVFTPKRCR 324
           HY G  W   A Q    Q ++     F ++      ID T A +      I +FT KR +
Sbjct: 201 HYSGSEWTPTAKQRVSFQYKVNTGNRFKKILSMGCYIDSTIA-IGYTDGSIEIFTKKRGK 259

Query: 323 YVSPIRR 303
           YVS + +
Sbjct: 260 YVSALNK 266


>08_02_0012 - 11247424-11247702
          Length = 92

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 416 DEESDVRERSLAARTGSEERRRSKDSHHNGVDLILVGIDTISMAVCSILYQAATR 580
           DE+ D  +R   AR     R R+ +    G DL   G + + + +  + +QAATR
Sbjct: 3   DEDDDELDRRQGARRAGGRRPRAAEGDSGGADLEWSG-NGVLVLMLHLDFQAATR 56


>05_05_0045 +
           21830291-21830343,21830446-21830541,21830620-21830694,
           21831329-21831403,21831497-21831719,21831813-21832056,
           21832621-21832769,21832913-21832944,21832991-21833078,
           21833157-21833438,21833542-21834243
          Length = 672

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 336 WSKYV--NNMNFFVEICSRYINEALERLKTKKVTSEND 443
           W  Y   N+MN FV+   R+ NE L++  +++  + ND
Sbjct: 309 WDDYYTENSMNGFVKRYDRFFNEKLQKEDSEEFQTSND 346


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 318 YIPTPLWSKYVNNMNFFVEICSRYIN 395
           ++P  +W K VNNM   ++I  +Y N
Sbjct: 317 HMPVNMWKKCVNNMLLVLDILQQYPN 342


>06_03_1255 + 28780181-28781172,28782065-28782932
          Length = 619

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 118 NGDLPHEFDNDIHRWSLECIGRVALDVRLGCLSPQLNSNSEPQRIMMPQSLLYETLQ 288
           N D+P E +N +HR     IGR     + G  +  +N N     ++  + LL E+ Q
Sbjct: 498 NYDMPAEIENYVHR-----IGRTGRRGKTGVATTFINKNQTETTLLDLKQLLIESKQ 549


>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 318 YIPTPLWSKYVNNMNFFVEICSRYIN 395
           ++P  +W K VNNM   ++I  +Y N
Sbjct: 631 HMPVNMWKKCVNNMLLVLDILQQYPN 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,830
Number of Sequences: 37544
Number of extensions: 307606
Number of successful extensions: 1019
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)