Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0970
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_36654| Best HMM Match : p450 (HMM E-Value=1.3e-27) 42 3e-04
SB_25597| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 42 4e-04
SB_12080| Best HMM Match : p450 (HMM E-Value=0) 41 9e-04
SB_5584| Best HMM Match : p450 (HMM E-Value=1) 32 0.31
SB_25359| Best HMM Match : p450 (HMM E-Value=0) 31 0.71
SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0) 30 1.2
SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11) 30 1.2
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 28 5.0
SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_30396| Best HMM Match : M20_dimer (HMM E-Value=4e-08) 27 8.7
>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +1
Query: 1 FRSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENG-DLPHE---FDNDIHRWSL 168
+RS + + IL+P+ V YV + + F++ + + R + G D +E DN++ +WS
Sbjct: 705 YRSVISKRILRPKEVADYVPEFDNIGSKFLERVENIRGKAGTDSEYEVENLDNELFKWSF 764
Query: 169 ECIGRVALDVRLGCLSPQLNSNSE 240
E + + D R G L +N +++
Sbjct: 765 ESVAYMLFDKRFGTLEENVNPDAQ 788
>SB_36654| Best HMM Match : p450 (HMM E-Value=1.3e-27)
Length = 377
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +1
Query: 1 FRSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENG-DLPHE---FDNDIHRWSL 168
+RS + + IL+P+ V YV + + F++ + R + G D +E DN++ +WS
Sbjct: 43 YRSVISKRILRPKEVADYVPEFDNIGSKFLERVEYIRGKAGTDSEYEVENLDNELFKWSF 102
Query: 169 ECIGRVALDVRLGCLSPQLN 228
E + + D R G L +N
Sbjct: 103 ESVAYMLFDKRFGTLEENVN 122
>SB_25597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +1
Query: 1 FRSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENG-DLPHE---FDNDIHRWSL 168
+RS + + IL+P+ V YV + + F++ + R + G D +E DN++ +WS
Sbjct: 159 YRSVISKRILRPKEVADYVPEFDNIGSKFLERVEYIRGKAGTDSEYEVENLDNELFKWSF 218
Query: 169 ECIGRVALDVRLGCLSPQLN 228
E + + D R G L +N
Sbjct: 219 ESVAYMLFDKRFGTLEENVN 238
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 4 RSKVQRPILQPQTVKKYVAPIELVTEDFI----KYMVDARDENGDLPHEFDNDIHRWSLE 171
R+ + + +L+P V Y + +T +F+ K A H +N++ RWS E
Sbjct: 835 RTVLSKKMLRPPEVAAYCPTFDAITNEFLIKIHKLRGPANSPKEYEVHGLENELFRWSFE 894
Query: 172 CIGRVALDVRLGCLSPQLNSNSE 240
I V D R GCL ++ +++
Sbjct: 895 NISTVLFDKRFGCLDDHVDPDAQ 917
>SB_12080| Best HMM Match : p450 (HMM E-Value=0)
Length = 522
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 4 RSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENGD--LPHEFDNDIHRWSLECI 177
RS + + +L+P+ V Y + V +DFI + + R D +P+ N + +WS+E I
Sbjct: 156 RSVLNKKMLKPKVVHGYAPELSNVVDDFIGRVNELRSTTSDKTVPN-LQNVLFKWSMESI 214
Query: 178 GRVALDVRLGCLSPQLNSNSE 240
G V + + G S + S+
Sbjct: 215 GTVLYEKQFGAFSKSGSEESQ 235
>SB_5584| Best HMM Match : p450 (HMM E-Value=1)
Length = 286
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 4 RSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENGD--LPHEFDNDIHRWSLE 171
RS + + +L+P+ V Y + V +DFI + + R D +P+ N++ +WS E
Sbjct: 123 RSVLNKKMLKPKVVDGYAPELSNVVDDFIGRVNELRSTTSDKTVPN-LQNELFKWSTE 179
>SB_25359| Best HMM Match : p450 (HMM E-Value=0)
Length = 1084
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 4 RSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDAR-DENGDLPHEFDN---DIHRWSLE 171
R + + +L P+ V++YV + +DF+ + + E +E N ++ R++ E
Sbjct: 705 RRAISKKLLVPRMVEQYVPTYNAIVDDFLARLSFIKGPEGSSYENEVSNLQDELFRFAFE 764
Query: 172 CIGRVALDVRLG 207
+G + D R G
Sbjct: 765 SVGFLLFDKRFG 776
>SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 RSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENGDLPHEFDNDIHRWSLECIGR 183
R+ + +L+P+ + K+V V D ++ + ARD ++ E + + ++++E IG
Sbjct: 164 RTAFGKKMLRPKELAKHVVGFSDVANDAMQSIKGARDGKMEV-EELELQLQKYTIESIGT 222
Query: 184 VALDVRLGCL-SPQLNSNSE 240
+ R+G SP + E
Sbjct: 223 LVYGFRVGIYDSPPRKESKE 242
>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 758
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 RSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENGDLPHEFDNDIHRWSLECIGR 183
R+ + +L+P+ + K+V V D ++ + ARD ++ E + + ++++E IG
Sbjct: 111 RTAFGKKMLRPKELAKHVVGFSGVANDAMQSIKGARDGKMEV-EELELQLQKYTIESIGT 169
Query: 184 VALDVRLGCL-SPQLNSNSE 240
+ R+G SP + E
Sbjct: 170 LVYGFRVGIYDSPPRKESKE 189
>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 618
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 413 EDEESDVRERSLAARTGSEERRRSKDSHHNGVDLILVGIDTISMAVCS 556
+D+E+DVR+ L + T E R S S H+ D I G D + + S
Sbjct: 556 DDDENDVRKTLLGSETADENRGESVYSFHDADDEIGDGDDARDVLIKS 603
>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
Length = 234
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 28 LQPQTVKKYVAPIELVTEDFIKYMVDARDENGDLPHEFDNDIHRWSLECIGRVALD 195
L + V+ +V P + + D K+++D DEN D + D + W L +G A D
Sbjct: 167 LDREEVRAWVLPEKGESLDEAKHLIDGSDENADGDLQLDEILLHWDL-FVGSKATD 221
>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 351 NNMNFFVEICSRYINEALERLKTKKVTSENDLSLLER 461
N N +EIC+ I L LK K SEN++ +L R
Sbjct: 72 NITNELIEICTSIIKFTLFELKIVKNVSENEIKVLMR 108
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/45 (22%), Positives = 28/45 (62%)
Frame = +2
Query: 407 KAEDEESDVRERSLAARTGSEERRRSKDSHHNGVDLILVGIDTIS 541
KA+ EES+ E S++ + +EE+++ + + + + +G++ ++
Sbjct: 318 KAKKEESNDNEESISYKKKNEEKKKKQSGSDHNWNTLFLGLNAVA 362
>SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 348 VNNMNFFV-EICSRYINEALERLKTKKVTSENDLSLLERVLRSEGDP 485
V +MN + E+CS++ NE R+K T E +L+ L+ V+ EG P
Sbjct: 213 VEDMNVHIHEVCSQFSNEMFGRIKQTTSTDE-ELTALKAVV-YEGWP 257
>SB_30396| Best HMM Match : M20_dimer (HMM E-Value=4e-08)
Length = 489
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 124 DLPHEFDNDIH-RWSLECIGRVALDVRLGCLSPQLNSNSEPQRIMMPQSLLYETLQ 288
+ P +F + +WSL +G ++ LGCL+ S ++P R M +L L+
Sbjct: 50 ECPEDFTRCLKAKWSLAIVGDISDGYILGCLTSA--SRAQPIRFKMADALKKSALE 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,255
Number of Sequences: 59808
Number of extensions: 359917
Number of successful extensions: 1492
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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