Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0970
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21321-2|AAG00050.1| 489|Caenorhabditis elegans Cytochrome p450... 42 4e-04
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 31 0.82
AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans Phosphodieste... 29 3.3
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 29 3.3
AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical ... 28 4.4
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 28 5.8
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 28 5.8
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 28 5.8
U80842-9|AAB37945.2| 258|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U21321-2|AAG00050.1| 489|Caenorhabditis elegans Cytochrome p450
family protein 44A1 protein.
Length = 489
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +1
Query: 4 RSKVQRPILQPQTVKKYVAPIELVTEDFIKYMVDARDENGDLPHEFDNDIHRWSLECIGR 183
RS VQ +++PQ+V+ Y+ ++V+ D + ++ D + G + + RWSLE G+
Sbjct: 142 RSSVQHAMMRPQSVQTYLPFSQIVSNDLVCHVADQQKRFGLV--DMQKVAGRWSLESAGQ 199
Query: 184 VALDVRLGCL 213
+ + LG L
Sbjct: 200 ILFEKSLGSL 209
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 30.7 bits (66), Expect = 0.82
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 343 LLQSGVGMYLQ*GAFSSKTATFRKANFAAS*CVAVLNCYSTVATDNPAGRPRRRGRY 173
L+ SG MYL G KTA+ A CVA++N + T+ RP+ G+Y
Sbjct: 94 LMDSGARMYLVNGI--GKTASELAAFVGHHECVAIINNHITIDVIEDLLRPKVNGKY 148
>AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans
Phosphodiesterase protein 6, isoformb protein.
Length = 697
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 422 ESDVRERSLAARTGSEERRRSKD 490
ES++R +SL G EERRRS D
Sbjct: 272 ESEMRRKSLPRARGEEERRRSCD 294
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 422 ESDVRERSLAARTGSEERRRSKD 490
ES++R +SL G EERRRS D
Sbjct: 272 ESEMRRKSLPRARGEEERRRSCD 294
>AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical
protein F56B3.2a protein.
Length = 432
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 154 ECRCRTHEASPRSRLGRLP-CT**SPP*PARLVPRTSS 44
+CRC H R GRLP C P PA++ R SS
Sbjct: 55 KCRCHPHYTETRDEKGRLPKCA----PLPAKIGARCSS 88
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 390 INEALERLKTKKVTSENDLSLLERVLRSEGDP--KIATIMALT*SLLGLIRFRWRFARSC 563
I E +RL T N L +R LRS+G+P A I+ L+ S +F+ + A C
Sbjct: 136 IREHNDRLCHNLATLFNSLRDKDRALRSKGEPIKPFAAILTLSDSFPQFEKFKQQDANEC 195
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 390 INEALERLKTKKVTSENDLSLLERVLRSEGDP--KIATIMALT*SLLGLIRFRWRFARSC 563
I E +RL T N L +R LRS+G+P A I+ L+ S +F+ + A C
Sbjct: 136 IREHNDRLCHNLATLFNSLRDKDRALRSKGEPIKPFAAILTLSDSFPQFEKFKQQDANEC 195
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 390 INEALERLKTKKVTSENDLSLLERVLRSEGDP--KIATIMALT*SLLGLIRFRWRFARSC 563
I E +RL T N L +R LRS+G+P A I+ L+ S +F+ + A C
Sbjct: 136 IREHNDRLCHNLATLFNSLRDKDRALRSKGEPIKPFAAILTLSDSFPQFEKFKQQDANEC 195
>U80842-9|AAB37945.2| 258|Caenorhabditis elegans Hypothetical
protein ZC239.6 protein.
Length = 258
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 241 VLNCYSTVAT-DNPAGRPRRRGRYIPKTICECRCRTHEASP 122
V +C +A D +GRP R + IC CR ++ +P
Sbjct: 84 VRDCEQAIARLDVGSGRPSERADPLSDIICNCRSTSNNVAP 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,852
Number of Sequences: 27780
Number of extensions: 258983
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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