Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0969
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    27   2.1  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   3.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.6  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   4.8  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   4.8  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   6.3  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   6.3  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   8.3  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 372 PLEVVASHSIEAPGAFARTNSQTRFLSVYSEYGELRFRQCTRQ 500
           P E+VA    EA   FA  N+Q    S  SEY  L F    R+
Sbjct: 49  PTEIVAFS--EAASKFAERNAQVILTSTDSEYSHLAFINTPRK 89


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = -3

Query: 218 TLFNQTKTPTI-WRTTALKSQQNCASLKKWVDVFLRLLIP----YIKTCRLLKNAE 66
           +L+N+  + T+  + T++++ Q C    +WV + + LL+P     +K C  + N E
Sbjct: 314 SLYNRINSQTVRTKYTSIEAGQFCLRGDRWVPLRINLLLPDENGKLKVCDDVDNPE 369


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -2

Query: 252 SNMDRITLAGTNAFQSNEDTDYLENNCVEEPTKLCEFKKMGGRILKT---VDSVYQDVQT 82
           S + ++ L   N F+  E T   ENN +   TKL + ++    ++K    VDS+ +++QT
Sbjct: 637 SKLQQLQLERAN-FEQKESTLSDENNDLR--TKLLKLEESNKSLIKKQEDVDSLEKNIQT 693

Query: 81  IEE 73
           ++E
Sbjct: 694 LKE 696


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 223 SRQGDTVHVRDTHSPVLLL*FADLQTNSFSPRQRSRHICRDPTVCVFLP 369
           S  G  + + D  +PVLLL +AD +T   S    S  I  +    V +P
Sbjct: 284 SLSGKLLRLDDVQTPVLLLKYADDETEYSSNTAPSNWIALEALPLVSIP 332


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 519 SVLIRPTAWCIDEIAVPRIHYIR--SKILFGSSSVRTRLVLR*SARLPPQGARQENT 355
           SV IR         A   +H I   S +    +++R+R +L   A L PQGA Q+N+
Sbjct: 78  SVSIRDITTHYYHFAEKMLHLISDDSLVQISLNTLRSRAMLIADASLNPQGALQQNS 134


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 320 CLGENEFVCRSANYNNKT 267
           CLG  +FV R + Y+N+T
Sbjct: 222 CLGHEDFVSRMSLYDNRT 239


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 308 NEFVCRSANYNNKTGECVSLTWTVSPWREPTLFNQTKTPTIWRTTALKSQQNCASLK 138
           N F C   N  +   EC  LT   SP+R  T+   T        TA  S  + +S+K
Sbjct: 38  NAFACDKQNTPSPNSECRPLTPLNSPFRR-TVEGDTANLQAPSPTACPSFDSASSIK 93


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 478 RSSPYSLYTLKNLVWEFVRANAP 410
           +SSPY+   LKNL   +++ +AP
Sbjct: 271 QSSPYNASILKNLAEIYIKIHAP 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,984
Number of Sequences: 5004
Number of extensions: 56937
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)