Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0969
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0381 - 2961422-2963917 32 0.30
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 30 1.6
10_07_0162 - 13713504-13714754,13716445-13716522 29 3.7
07_03_0845 - 21979581-21981281 29 3.7
03_03_0134 + 14732622-14732830,14733202-14733316,14733429-147336... 29 3.7
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 28 4.9
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 4.9
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626... 28 4.9
08_01_0958 + 9532423-9533202 28 6.5
>01_01_0381 - 2961422-2963917
Length = 831
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 147 EFKKMGGRILKTVDSVYQDVQTIEECRELCLNSPFRCHSYDHGDTG 10
+F M IL QDV + +EC ++CLN+ C +Y +G G
Sbjct: 370 KFYSMSDIILPDKAESMQDVDSSDECMKVCLNN-CSCTAYSYGSKG 414
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -3
Query: 299 VCRSANYNNKTGECVSLTWTVSPWREPTLFNQTKTPTIWRTTALKSQQNCASLKKWVDVF 120
VC S+ N + G + WTV P+ + P W L + N S +WV++
Sbjct: 336 VCLSSGDNYQYG---AYKWTVMLVSNPSRLEKMLLPIFWGLMTLSTFGNLESTTEWVEIV 392
Query: 119 LRLL 108
++
Sbjct: 393 FNIM 396
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 224 EPTLFNQTKTPTIWRTTALKSQQNCASLKKWVDVFLRLLIPYIKTCRLLK 75
+PT+ +T + +W T A K Q W + R L +I C++L+
Sbjct: 392 DPTMSIETDSARMWETVARKGQHRSFVANLWSTIAGRNLKSHIIHCQVLQ 441
>07_03_0845 - 21979581-21981281
Length = 566
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 93 DVQTIEECRELCLNSPFRCHSYDH 22
+VQ+ EECR +CLN+ C +Y H
Sbjct: 379 NVQSEEECRSICLNNCI-CTAYAH 401
>03_03_0134 +
14732622-14732830,14733202-14733316,14733429-14733632,
14733862-14733990,14734077-14734244,14734920-14735177,
14736051-14736096,14736574-14736601,14737206-14737295,
14738132-14738204,14738291-14738319,14738425-14738548,
14738741-14738851,14739082-14739182,14739263-14739365
Length = 595
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 245 MLETHTRRFYCYSSQICKQIRFRRDKGQGTSAEIQRCVFSCRAP*GGSLALYRSTRRVRT 424
+LE + C I K + F + K +GT+++ + R P A Y++ R+R+
Sbjct: 81 ILEDIVQHTLCSLHGIQKSLLFWQSKAEGTNSQKMYFMIFERGPRAFVKATYQTLTRLRS 140
Query: 425 DELPNK 442
+E P +
Sbjct: 141 NESPTQ 146
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 473 TAISSMHQAVGRIRTEKHTKSRLVIYGATGVVSMALLE 586
T++ H+A+ R+RT + RL+ YGA V + +++
Sbjct: 379 TSMHDSHEALCRLRTNLDEEERLMKYGALSVEAPTVID 416
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 583 EQCHANDTCRAVNYETGLCVLFSSDPTNCLV 491
++C N +C A Y +L + DP+ CLV
Sbjct: 1070 DECDRNCSCTAYAYANLRTILTTGDPSRCLV 1100
>01_06_0933 -
33161687-33162205,33162290-33162376,33162459-33162695,
33162778-33162886,33162997-33163313,33163398-33163607,
33165380-33165901
Length = 666
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = -3
Query: 245 WTVSPWREPTLFNQTKTPTIWRTTALKSQQNCASLKKWVDVFLRLL 108
WTV P+ + P W L + N AS +W+++ ++
Sbjct: 324 WTVMLVANPSRLEKILLPIFWGLMTLSTFGNLASTTEWLEIVFNII 369
>08_01_0958 + 9532423-9533202
Length = 259
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Frame = -3
Query: 407 CFDRVRGYHL-------KGHGKKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGECVSL 249
CF+ VRG+H KG K H +R G F R+ + TG C ++
Sbjct: 101 CFETVRGFHYYGSRKTGKGEHPKLHPCCARLPVSIAVRGGLTFELRAEVSHRCTG-CRAM 159
Query: 248 TWTVSPW 228
W PW
Sbjct: 160 EWYYRPW 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,885,122
Number of Sequences: 37544
Number of extensions: 388067
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -