Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0969
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 41 8e-04
Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z50859-2|CAA90727.2| 524|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 36 0.016
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 36 0.016
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 34 0.066
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 34 0.066
U41510-5|AAK39384.3| 453|Caenorhabditis elegans Hypothetical pr... 34 0.066
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 33 0.15
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 32 0.35
Z81522-8|CAB04231.2| 786|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 30 1.1
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 2.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 2.5
Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical p... 29 3.3
Z48009-10|CAA88082.1| 331|Caenorhabditis elegans Hypothetical p... 28 5.8
U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeo... 28 5.8
U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeo... 28 5.8
Z50177-3|CAA90545.2| 765|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 27 7.6
>Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical
protein F52B11.3 protein.
Length = 741
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = -3
Query: 416 RAWCFDRVRGYHLKGHGKKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGEC 258
R++ F+R R L+G KK+ TV +R+ CL CL E EFVC+S N++ T C
Sbjct: 125 RSFSFERARNTQLEGFVKKSVTVENREHCLSACLKEKEFVCKSVNFHYDTSLC 177
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/50 (22%), Positives = 18/50 (36%)
Frame = -3
Query: 404 FDRVRGYHLKGHGKKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGECV 255
F + + ++ + CL CL CRS +N K C+
Sbjct: 220 FVKTTNFEIRYYDHTQSVEAQESYCLQKCLDSLNTFCRSVEFNPKEKNCI 269
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = -2
Query: 213 FQSNEDTDYLENNCVEEP--TKLCEFKKMGGRILKTV-DSVYQDVQTIEECRELCL 55
F+++ D ENNCV+ + C F ++ G LK+V D + Q+V + +EC ++C+
Sbjct: 179 FKASYSVDLYENNCVDYAMTSSACTFMRVNGGGLKSVSDQLIQNVGSFDECEQMCV 234
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -3
Query: 449 QKSCLGVRPCERAWCFDRVRGYHLKGHGKKT-HTVGSRQMCLDLCLGENEF--VCRSANY 279
+ +C+ A F RV G LK + VGS C +C+ + VCRS Y
Sbjct: 189 ENNCVDYAMTSSACTFMRVNGGGLKSVSDQLIQNVGSFDECEQMCVIRSRISDVCRSYTY 248
Query: 278 NNKTGECVSLTW 243
+N T EC +L W
Sbjct: 249 DNSTNEC-NLMW 259
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 446 KSCLGVRPCERAWCFDRVRGYHLKGHGK--KTHTVGSRQMCLDLCLGENEFVCRSANYNN 273
K+CL + +R++ F++ G L KT ++ S + CL C + E CR+A +NN
Sbjct: 101 KTCLENKCLKRSFAFEKFPGRSLVNSSFIIKTFSI-SMEECLSQC--QKESSCRAALHNN 157
Query: 272 KTGEC 258
T C
Sbjct: 158 DTSLC 162
>Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical
protein F38E11.4 protein.
Length = 751
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -3
Query: 422 CERAWCFDRVRGYHLKGHGKKTHTVGSRQMCLDLC-LGEN--EFVCRSANYNNKTGECV 255
C+ + F+R L GH K TV CL C L + +F+C+SA Y +TGEC+
Sbjct: 120 CKAPYSFERYPQSILIGHAMKVLTVDGLSDCLSKCALSQRSYDFLCKSAIYYYETGECI 178
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = -2
Query: 258 CVSNMDRITLAGTNAFQSNE-DT--DYLENNCVE---EPTKLCEFKKMGGRILKTVDSVY 97
C+ N D + F++N DT DY ENNC + +P + + + ++ V
Sbjct: 177 CIMNRDNKFIY-PKLFKTNILDTLVDYFENNCADVSCKPEETLHWVRTEEYLIDESKDVI 235
Query: 96 QDVQTIEECRELCLNS 49
+ +EC +LC N+
Sbjct: 236 VESSDAQECNQLCQNN 251
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 338 QMCLDLCLGENEFVCRSANYNNKTGEC 258
Q+C + +GE F C++ Y+N EC
Sbjct: 246 QLCQNNKIGEENFPCKAFAYSNSKQEC 272
>Z50859-2|CAA90727.2| 524|Caenorhabditis elegans Hypothetical
protein T26C5.2 protein.
Length = 524
Score = 37.9 bits (84), Expect = 0.005
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -3
Query: 338 QMCLDLCLGENEFVCRSANYNNKTGECVSLT 246
Q+C++LC+ +F CRS+ +N TG+C +T
Sbjct: 429 QLCIELCVLSTKFTCRSSTFNPITGQCRLMT 459
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 36.3 bits (80), Expect = 0.016
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 464 FTIYAQKSCL-GVRPCERAWCFDRVRGYHLKGHGK-KTHTVGSRQMCLDLCLGENEFVCR 291
FT Y K CL R C + F + ++ K T + + CL CL E F CR
Sbjct: 109 FTFY-WKYCLPSTRKCSGEYAFTYLSDRYMDQKSVIKWTTKANLEECLSDCLDEKSFECR 167
Query: 290 SANYNNKTGEC 258
S ++N G C
Sbjct: 168 SISFNRTDGGC 178
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 36.3 bits (80), Expect = 0.016
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 464 FTIYAQKSCL-GVRPCERAWCFDRVRGYHLKGHGK-KTHTVGSRQMCLDLCLGENEFVCR 291
FT Y K CL R C + F + ++ K T + + CL CL E F CR
Sbjct: 109 FTFY-WKYCLPSTRKCSGEYAFTYLSDRYMDQKSVIKWTTKANLEECLSDCLDEKSFECR 167
Query: 290 SANYNNKTGEC 258
S ++N G C
Sbjct: 168 SISFNRTDGGC 178
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 36.3 bits (80), Expect = 0.016
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 464 FTIYAQKSCL-GVRPCERAWCFDRVRGYHLKGHGK-KTHTVGSRQMCLDLCLGENEFVCR 291
FT Y K CL R C + F + ++ K T + + CL CL E F CR
Sbjct: 109 FTFY-WKYCLPSTRKCSGEYAFTYLSDRYMDQKSVIKWTTKANLEECLSDCLDEKSFECR 167
Query: 290 SANYNNKTGEC 258
S ++N G C
Sbjct: 168 SISFNRTDGGC 178
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 34.3 bits (75), Expect = 0.066
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 392 RGYHLKGHG--KKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGEC 258
R H K G K + V S CL++C G C ANYN + G+C
Sbjct: 513 RYLHTKQRGIPAKVYKVVSLNSCLEVCAGNP--TCAGANYNRRLGDC 557
Score = 30.7 bits (66), Expect = 0.82
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -3
Query: 323 LCLGENEFVCRSANYNNKTGECVSLTWTVSPWREPTLFNQTKTPTIWRTTALKSQQNCAS 144
L + N+F C+S YNNKT C+ P L T+ T + S C +
Sbjct: 251 LSISSNDFNCKSFMYNNKTRTCILADERSKPLGRADLI-ATEGFTYFEKKCFASPNTCRN 309
Query: 143 LKKWVDVFLRLLIPY 99
+ + V +L+ +
Sbjct: 310 VPSFKRVPQMILVGF 324
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = -3
Query: 446 KSCL-GVRPCERAWCFDRVRGYHLKGHGKKTHTVGSRQMCLDLCLGENE---FVCRSANY 279
K+C+ R C+ + FD L G ++ + Q+C+ CL + F C SA +
Sbjct: 95 KTCVKSDRVCQSPFQFDLFEQRILVGFAREVVPAANIQICMAACLNAFDTFGFECESAMF 154
Query: 278 NNKTGECVSLTWTVSPWREPTLFNQTKTPTI 186
EC+ T P+LF + T+
Sbjct: 155 YPVDQECI--LNTEDRLDRPSLFVEESDDTV 183
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 371 HGKKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGEC 258
H K + C+ C G CRS NY+ KT C
Sbjct: 428 HVLKASAAKGIKECVAKCFGLAPEKCRSFNYDKKTKSC 465
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 34.3 bits (75), Expect = 0.066
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 392 RGYHLKGHG--KKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGEC 258
R H K G K + V S CL++C G C ANYN + G+C
Sbjct: 509 RYLHTKQRGIPAKVYKVVSLNSCLEVCAGNP--TCAGANYNRRLGDC 553
Score = 30.7 bits (66), Expect = 0.82
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -3
Query: 323 LCLGENEFVCRSANYNNKTGECVSLTWTVSPWREPTLFNQTKTPTIWRTTALKSQQNCAS 144
L + N+F C+S YNNKT C+ P L T+ T + S C +
Sbjct: 251 LSISSNDFNCKSFMYNNKTRTCILADERSKPLGRADLI-ATEGFTYFEKKCFASPNTCRN 309
Query: 143 LKKWVDVFLRLLIPY 99
+ + V +L+ +
Sbjct: 310 VPSFKRVPQMILVGF 324
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = -3
Query: 446 KSCL-GVRPCERAWCFDRVRGYHLKGHGKKTHTVGSRQMCLDLCLGENE---FVCRSANY 279
K+C+ R C+ + FD L G ++ + Q+C+ CL + F C SA +
Sbjct: 95 KTCVKSDRVCQSPFQFDLFEQRILVGFAREVVPAANIQICMAACLNAFDTFGFECESAMF 154
Query: 278 NNKTGECVSLTWTVSPWREPTLFNQTKTPTI 186
EC+ T P+LF + T+
Sbjct: 155 YPVDQECI--LNTEDRLDRPSLFVEESDDTV 183
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 371 HGKKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGEC 258
H K + C+ C G CRS NY+ KT C
Sbjct: 428 HVLKASAAKGIKECVAKCFGLAPEKCRSFNYDKKTKSC 465
>U41510-5|AAK39384.3| 453|Caenorhabditis elegans Hypothetical
protein ZC449.2 protein.
Length = 453
Score = 34.3 bits (75), Expect = 0.066
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 586 LEQCHANDTCRAVNYETGLCVLFSSDPT 503
L +C N C+AV Y+ G+CVL S P+
Sbjct: 348 LSECIENRECKAVTYKNGMCVLHSVSPS 375
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = -2
Query: 192 DYLENNCVEEPTKLCEFKKMGGRILKTVD----SVYQDVQTIEECRELCLNS-PFRCHSY 28
DY ENNCV PT C ++ + + D + V++I C + C+N+ F C S
Sbjct: 166 DYYENNCV-HPTARCPNGRIEFVVTRKADVPSFGISLGVKSIRSCMQACVNAGQFYCRSV 224
Query: 27 DHGDTGD 7
T +
Sbjct: 225 QFDSTSN 231
Score = 30.7 bits (66), Expect = 0.82
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 350 VGSRQMCLDLCLGENEFVCRSANYNNKTGEC 258
V S + C+ C+ +F CRS +++ + EC
Sbjct: 203 VKSIRSCMQACVNAGQFYCRSVQFDSTSNEC 233
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 31.9 bits (69), Expect = 0.35
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -3
Query: 494 GALTKSQFPVFTI---YAQKSCLGVRPCERAWCFDRVRGYHLKGHGKK--THTVGSRQMC 330
GA+ KS PV + Y Q C +R WC D + G + G KK + S+ MC
Sbjct: 1719 GAVLKSPLPVCSRNGNYDQTQCDN----KRCWCVDELSGEEIHGTRKKKTKNACKSQSMC 1774
Query: 329 LDLC 318
L C
Sbjct: 1775 LSKC 1778
>Z81522-8|CAB04231.2| 786|Caenorhabditis elegans Hypothetical
protein F32B4.8 protein.
Length = 786
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 398 RVRGYHLKGHGKKTHTVGSRQMCLDLCLGENEFVCRSANYNNK 270
R R L GH H+VGS C+DLC+ ++ C S + K
Sbjct: 676 RYRQKVLIGHLVDAHSVGSAAECIDLCIEKHIIGCVSVMFYAK 718
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -2
Query: 237 ITLAGTNAFQSNEDTDYLENNCVEEPTKLCEFKKMGGRILKTVDSVYQDVQTIEECRELC 58
I + +N F E+ +Y+E CV++ K+ RIL +T EC LC
Sbjct: 71 IVIDKSNYFGRIEERNYIEKKCVKKAPHRLLVKEWDDRILVDKSQSVLKAETKLECLSLC 130
Query: 57 LNSP-FRCHS 31
F C S
Sbjct: 131 AQEKRFPCLS 140
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -2
Query: 237 ITLAGTNAFQSNEDTDYLENNCVEEPTKLCEFKKMGGRILKTVDSVYQDVQTIEECRELC 58
I + +N F E+ +Y+E CV++ K+ RIL +T EC LC
Sbjct: 71 IVIDKSNYFGRIEERNYIEKKCVKKAPHRLLVKEWDDRILVDKSQSVLKAETKLECLSLC 130
Query: 57 LNSP-FRCHS 31
F C S
Sbjct: 131 AQEKRFPCLS 140
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 350 VGSRQMCLDLCLGENEFVCRSANYNNKTGEC-VSLTWTVS 234
+ S + C C G EF CRSA YN++T C +S +TV+
Sbjct: 49 LASVKECAAFCAGR-EF-CRSAVYNSRTKTCGISYEYTVA 86
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -3
Query: 362 KTHTVGSRQMCLDLCLGE----NEFVCRSANYNNKTGECVS 252
K VGS +D+CLGE N F NY + G+C+S
Sbjct: 1341 KVAAVGSACRPIDICLGESVCTNGFCHCPENYIRQNGQCIS 1381
>Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical
protein M162.3 protein.
Length = 347
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 73 FFNSLHVLIYGINSLKNTSTHFFKLAQFCWLFNAVVLQIVGVFV*LKSVGSRQGDTVHVR 252
FFN+ L+Y ++ + Q CW N I ++V L S R+ + R
Sbjct: 249 FFNTGTALVYNALAIVTPAEWILAFGQICWTCNHASPAI--IYVSLNSTIRREFLKIVFR 306
Query: 253 DTHSPVLLL 279
+T +PV L+
Sbjct: 307 NTLAPVNLI 315
>Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical
protein C30H6.5 protein.
Length = 527
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 264 RVCVSNMDRITLAGTNAFQSNEDTDYLENNCVEEPTKLCEFKKMGG 127
++C+ N + L G + + + DY EN C T E +GG
Sbjct: 368 KICILNGGNLHLNGGDTLVGSREFDYFENTCQPRSTTTTE-SSIGG 412
>Z48009-10|CAA88082.1| 331|Caenorhabditis elegans Hypothetical
protein AH6.14 protein.
Length = 331
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 67 SAFFNSLHVLIYGINSLKNTSTHFFKLAQFC 159
S FF +L+ + YGI ++ H F + FC
Sbjct: 62 SLFFANLYQIFYGIEAITILYKHHFMTSDFC 92
>U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform a protein.
Length = 632
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 423 VRTRLVLR*SARLPPQGARQENTHRWISADVP*PLSRRKRI 301
++T V R S PP A+ THR ++D P+S+R R+
Sbjct: 383 MKTEDVNRASGMSPPTPAQNVRTHRRSTSDHDGPVSKRPRL 423
>U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform b protein.
Length = 641
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 423 VRTRLVLR*SARLPPQGARQENTHRWISADVP*PLSRRKRI 301
++T V R S PP A+ THR ++D P+S+R R+
Sbjct: 392 MKTEDVNRASGMSPPTPAQNVRTHRRSTSDHDGPVSKRPRL 432
>Z50177-3|CAA90545.2| 765|Caenorhabditis elegans Hypothetical
protein F46G10.5 protein.
Length = 765
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 272 YCYSSQICKQIRFRRDKGQGTSAEIQRCVFSCRAP*GGSLALYRST 409
YCY Q +I+ R K + +++C F C A S+A++ T
Sbjct: 669 YCYYYQQAMRIKLRAKKVDRMNEMLRKCFFPCIASVICSIAVFVPT 714
>AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical
protein T04D1.2 protein.
Length = 381
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = -3
Query: 191 TIWRTTALKSQQNCASLKKWVDVFLRLLIPYIKTCRLLKNAENFV*IRLSVVT 33
++W + +K ++C++ KK + F L +PY+ ++ F ++LS ++
Sbjct: 13 SLWNSNRIKKGRSCSNQKKKCNSFNLLQLPYLAFRIVIHQLSIFSVLQLSQIS 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,602
Number of Sequences: 27780
Number of extensions: 337494
Number of successful extensions: 934
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -