Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0969
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06230.2 68418.m00695 expressed protein contains Pfam profile... 31 0.58
At5g06230.1 68418.m00696 expressed protein contains Pfam profile... 31 0.58
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 31 0.77
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 30 1.0
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 30 1.3
At1g78290.2 68414.m09124 serine/threonine protein kinase, putati... 29 1.8
At1g78290.1 68414.m09123 serine/threonine protein kinase, putati... 29 1.8
At1g16070.1 68414.m01928 tubby family protein similar to Tubby r... 29 3.1
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 28 4.1
At3g48330.2 68416.m05275 protein-L-isoaspartate O-methyltransfer... 28 5.4
At3g48330.1 68416.m05274 protein-L-isoaspartate O-methyltransfer... 28 5.4
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ... 27 7.1
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 27 9.4
>At5g06230.2 68418.m00695 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 372
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -2
Query: 186 LENNCVEEPTKLCEFKKMGGRILKTVDSVYQDVQTI---EECRELCLNSPFRCHSYDHGD 16
L ++ + TK C++ K G+ ++ S V + EECR L+S FRCH + D
Sbjct: 9 LSSSSSQTVTKECDYSK--GKWVRRASSSSSSVNGLFYGEECR--FLDSGFRCHKHGRKD 64
Query: 15 TG 10
+G
Sbjct: 65 SG 66
>At5g06230.1 68418.m00696 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 413
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -2
Query: 186 LENNCVEEPTKLCEFKKMGGRILKTVDSVYQDVQTI---EECRELCLNSPFRCHSYDHGD 16
L ++ + TK C++ K G+ ++ S V + EECR L+S FRCH + D
Sbjct: 50 LSSSSSQTVTKECDYSK--GKWVRRASSSSSSVNGLFYGEECR--FLDSGFRCHKHGRKD 105
Query: 15 TG 10
+G
Sbjct: 106 SG 107
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 79 NSLHVLIYGINSLKNTSTHFFKLAQ-FCWLFNAVVLQIVGV 198
+SLH + +S KNTS FF L W F+ +L I+G+
Sbjct: 31 SSLHKFLDNKSSKKNTSKFFFNLRNPKLWAFSLFLLSILGI 71
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -3
Query: 413 AWCFDRVRG---YHLKGHGKKTHTVGSRQMCLDLCLGENEFVCRSANYNNKTGECVSL 249
A+C+D G KGH HTV SR + G + R ++ KTG+CV +
Sbjct: 183 AYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARI--WDCKTGKCVKV 238
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 230 WREPTLFNQTKTPTIWRTTALKSQQNCAS 144
W++ F Q + T W+TT S + CA+
Sbjct: 974 WKDSVCFGQPRNDTNWQTTPSSSYEQCAT 1002
>At1g78290.2 68414.m09124 serine/threonine protein kinase, putative
similar to serine-threonine protein kinase [Triticum
aestivum] gi|2055374|gb|AAB58348
Length = 343
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 168 EEPTKLCEFKKMGGRILKTVDSVYQDVQTIEECREL 61
E+P+ +F+K GRILK ++ V+ +ECR L
Sbjct: 201 EDPSDPKDFRKTIGRILKAQYAIPDYVRVSDECRHL 236
>At1g78290.1 68414.m09123 serine/threonine protein kinase, putative
similar to serine-threonine protein kinase [Triticum
aestivum] gi|2055374|gb|AAB58348
Length = 343
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 168 EEPTKLCEFKKMGGRILKTVDSVYQDVQTIEECREL 61
E+P+ +F+K GRILK ++ V+ +ECR L
Sbjct: 201 EDPSDPKDFRKTIGRILKAQYAIPDYVRVSDECRHL 236
>At1g16070.1 68414.m01928 tubby family protein similar to Tubby
related protein 1 (Tubby-like protein 1)
(Swiss-Prot:Q9Z273) [Mus musculus]; low similarity to
Tubby related protein 1 (Tubby-like protein 1)
(Swiss-Prot:O0029) {Homo sapiens}; similar to
phosphodiesterase (GI:467578) [Mus musculus]; contains
Pfam profile PF01167: Tub family
Length = 397
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 439 VWEFVRANAPGASIECEATTSRGTARKHTPLDLGRCALTFVSAKT 305
VWEF + A AS +R K PLD+GRC V ++
Sbjct: 121 VWEFSDSEAAPAS-SWSTLPNRALLCKTLPLDVGRCTCLIVKEQS 164
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 455 YAQKSCLGVRPCERAWCFDRVRGYHLKGHGKKTHTVGSRQ 336
Y +SCLG P E + + GYH H T+G ++
Sbjct: 168 YFIRSCLGYDPVEDKYKVLSISGYHNGNHDPLVFTLGPQE 207
>At3g48330.2 68416.m05275 protein-L-isoaspartate O-methyltransferase
/ PIMT (PCM) identical to SP|Q42539
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
(Protein- beta-aspartate methyltransferase) (PIMT)
(Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
protein carboxyl methyltransferase) {Arabidopsis
thaliana}
Length = 230
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 168 EEPTKLCEFKKMGGRILKTVDSVYQDVQTIEE 73
E P L + K GGR++ V +++QD+Q +++
Sbjct: 170 EIPEALIDQLKPGGRLVIPVGNIFQDLQVVDK 201
>At3g48330.1 68416.m05274 protein-L-isoaspartate O-methyltransferase
/ PIMT (PCM) identical to SP|Q42539
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
(Protein- beta-aspartate methyltransferase) (PIMT)
(Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
protein carboxyl methyltransferase) {Arabidopsis
thaliana}
Length = 230
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 168 EEPTKLCEFKKMGGRILKTVDSVYQDVQTIEE 73
E P L + K GGR++ V +++QD+Q +++
Sbjct: 170 EIPEALIDQLKPGGRLVIPVGNIFQDLQVVDK 201
>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = -3
Query: 464 FTIYAQKSC--LGVRPCERAWCFDRVRGYHLKGHGKKTHTVGSRQMCLDLCLGENEFVCR 291
FT ++++ C +GV C D + L +T+GS L +E C
Sbjct: 291 FTTHSKEVCGRMGVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCG 350
Query: 290 SANYNNKTGECVSLTWTVSPWREPT 216
N GE +S T+ WR T
Sbjct: 351 LPLALNVIGETMSFKRTIQEWRHAT 375
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 263 RRFYCYSSQICKQIRFRRDKGQGTSAEIQRCVFSC 367
RRF YS ++C + R D +G E VF C
Sbjct: 119 RRFQ-YSGEVCPEFRRGGDCSRGDDCEFAHGVFEC 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,776
Number of Sequences: 28952
Number of extensions: 305530
Number of successful extensions: 874
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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