Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0968
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VEQ6 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_A7NY13 Cluster: Chromosome chr6 scaffold_3, whole genom...    32   9.3  

>UniRef50_A4VEQ6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 275

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 530 HGHYYAEPDRLYLATTVRATNTKAINLIKASLNKQLSEY 414
           + H Y   D + ++T ++  N K   LI  ++NK+LS+Y
Sbjct: 133 NNHLYNLIDNIMISTAIKQNNDKINQLINTNINKKLSKY 171


>UniRef50_A7NY13 Cluster: Chromosome chr6 scaffold_3, whole genome
           shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome
           chr6 scaffold_3, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 1096

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 117 WLKPIVF-LIN*FCIRHTLSPSDKCDINKCW 28
           W   I + L+    + H L+P+D CDIN CW
Sbjct: 17  WAHSISYVLVKWVNLGHALNPTDPCDINGCW 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,822,356
Number of Sequences: 1657284
Number of extensions: 9023571
Number of successful extensions: 15103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15094
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)