Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0968
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   6.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   8.6  

>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 304 RNSSNKHLI*TA*RSMSLNPYDLNKL*FH*ARDRPKTYSDSCLFSDAF 447
           + S+NK ++ T  R  +L  Y    L  +   +  + YS+ C F+D F
Sbjct: 337 KGSTNKEILETILRKPNLQTYFFEFLKKNFCDENQRFYSEVCEFNDYF 384


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 494 LATTVRATNTKAINLIKASL 435
           LATTV ATN   +NL+  SL
Sbjct: 328 LATTVNATNECMVNLLTDSL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,625
Number of Sequences: 5004
Number of extensions: 43053
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)