Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0967
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01985.1 68417.m00265 expressed protein                             30   1.4  
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei...    28   5.7  
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear...    27   7.6  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    27   7.6  

>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 461 AVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 363
           AVGG    ++ G GRG     G A GG+  G G
Sbjct: 301 AVGGGGGGSVGGGGRGSGGASGGASGGASGGAG 333



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 461 AVGGDAVSAISGVGRGDSVRCGDAIGGSDQG 369
           AVGG    ++ G GRG     G A GG+  G
Sbjct: 369 AVGGGGGGSVGGGGRGSGGASGGASGGASGG 399



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 476 SVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGS 351
           +V A   G    S   GVG G     G ++GG  +G G VG+
Sbjct: 219 TVGAGGRGSGGASGGVGVGGGAGGSGGGSVGGGGRGSGGVGA 260


>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 857

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 202 HNTEAVRQAAEASREIHEPPTGTA 273
           +N E +RQ + A   IHEPP GT+
Sbjct: 796 YNLEQLRQISGARVIIHEPPLGTS 819


>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
           antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
           15}
          Length = 118

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 428 GVGRGDSVRCGDAIGGSDQGRGEV 357
           G GRGD    G  IGG  +GRG +
Sbjct: 57  GGGRGDGRGDGRGIGGGGRGRGRI 80


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 452 GDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGS 351
           G+A S  S    G+S   G A GGS +  GE GS
Sbjct: 305 GEAASGGSAETGGESASAGAASGGSAETGGESGS 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,272,712
Number of Sequences: 28952
Number of extensions: 93145
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)