BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0966 (433 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 130 9e-32 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 74 1e-14 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 71 6e-14 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 71 8e-14 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 8e-07 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 2e-06 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 4e-04 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.17 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.31 SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 0.70 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 0.93 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.6 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.2 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 2.8 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.8 SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 6.5 SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.6 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.6 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 130 bits (314), Expect = 9e-32 Identities = 56/62 (90%), Positives = 59/62 (95%) Frame = +2 Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427 ++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120 Query: 428 QI 433 QI Sbjct: 121 QI 122 Score = 126 bits (305), Expect = 1e-30 Identities = 56/61 (91%), Positives = 60/61 (98%) Frame = +3 Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 252 R 254 R Sbjct: 62 R 62 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 73.7 bits (173), Expect = 1e-14 Identities = 27/60 (45%), Positives = 47/60 (78%) Frame = +2 Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 430 +S+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121 Score = 55.6 bits (128), Expect = 3e-09 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%) Frame = +3 Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61 Query: 252 R 254 R Sbjct: 62 R 62 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 71.3 bits (167), Expect = 6e-14 Identities = 29/57 (50%), Positives = 36/57 (63%) Frame = +2 Query: 263 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 433 +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +I Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEI 145 Score = 42.7 bits (96), Expect = 2e-05 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Frame = +3 Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 239 +++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ + Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 70.9 bits (166), Expect = 8e-14 Identities = 31/55 (56%), Positives = 40/55 (72%) Frame = +3 Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ R Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66 Score = 66.5 bits (155), Expect = 2e-12 Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 1/61 (1%) Frame = +2 Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMT 427 + +L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125 Query: 428 Q 430 + Sbjct: 126 E 126 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 47.6 bits (108), Expect = 8e-07 Identities = 21/54 (38%), Positives = 30/54 (55%) Frame = +2 Query: 260 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 421 + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116 Score = 40.3 bits (90), Expect = 1e-04 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 176 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 46.0 bits (104), Expect = 2e-06 Identities = 20/53 (37%), Positives = 32/53 (60%) Frame = +2 Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 433 P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT++ Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTEL 137 Score = 35.9 bits (79), Expect = 0.003 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +3 Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 185 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 38.7 bits (86), Expect = 4e-04 Identities = 20/57 (35%), Positives = 33/57 (57%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245 EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58 Score = 36.3 bits (80), Expect = 0.002 Identities = 13/49 (26%), Positives = 29/49 (59%) Frame = +2 Query: 284 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 430 +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIME 122 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 29.9 bits (64), Expect = 0.17 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -1 Query: 232 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71 PT S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 29.1 bits (62), Expect = 0.31 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -2 Query: 273 YLRVRILFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 154 Y + L + L+ K+PS PY SRP A S TR Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335 >SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 127 Score = 27.9 bits (59), Expect = 0.70 Identities = 23/58 (39%), Positives = 28/58 (48%) Frame = -3 Query: 266 GSGYSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 93 G G +F CLI++IR +SH D EHG II C T L G I+YY Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 27.5 bits (58), Expect = 0.93 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +3 Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254 G+ PRA F ++ P H G+++ M KD G+E S + Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPK 539 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.6 bits (56), Expect = 1.6 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -1 Query: 235 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 119 S T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 26.2 bits (55), Expect = 2.2 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +2 Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQ 430 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQ 167 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 25.8 bits (54), Expect = 2.8 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +2 Query: 335 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQI 433 +Y L E+HP+LLT+ A L P+ + ++ +I Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI 1433 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 25.8 bits (54), Expect = 2.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 117 TYRSHCLLPTRQLLRRTS*ISEI 49 TYR H +PT LL T +SEI Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190 >SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 22.2 bits (45), Expect(2) = 6.5 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +2 Query: 254 SILTLKYPIEHGIVTN 301 +I+T YP HGIV+N Sbjct: 124 TIVTGLYPESHGIVSN 139 Score = 20.6 bits (41), Expect(2) = 6.5 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 296 TNWDDMEKIWHHTFYNELRVAPEEHP 373 T WD E IW + N +R A P Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187 >SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 485 Score = 24.6 bits (51), Expect = 6.6 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Frame = +3 Query: 102 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 254 N +GM + R F S VG + VG Q+DSY+ D++ S+R Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 24.6 bits (51), Expect = 6.6 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 Query: 90 LVVDNGSGMCKAGFAG 137 +V+DNG+ KAGFAG Sbjct: 8 IVLDNGAYHIKAGFAG 23 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,922,995 Number of Sequences: 5004 Number of extensions: 41547 Number of successful extensions: 115 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 112 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 154067960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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