Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0966
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 130 9e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 74 1e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 71 6e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 71 8e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 8e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 2e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 4e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.17
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.31
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 0.70
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 0.93
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.6
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.2
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 2.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.8
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 6.5
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 130 bits (314), Expect = 9e-32
Identities = 56/62 (90%), Positives = 59/62 (95%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 428 QI 433
QI
Sbjct: 121 QI 122
Score = 126 bits (305), Expect = 1e-30
Identities = 56/61 (91%), Positives = 60/61 (98%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 252 R 254
R
Sbjct: 62 R 62
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 73.7 bits (173), Expect = 1e-14
Identities = 27/60 (45%), Positives = 47/60 (78%)
Frame = +2
Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 430
+S+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Score = 55.6 bits (128), Expect = 3e-09
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 252 R 254
R
Sbjct: 62 R 62
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 71.3 bits (167), Expect = 6e-14
Identities = 29/57 (50%), Positives = 36/57 (63%)
Frame = +2
Query: 263 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 433
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +I
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEI 145
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 239
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 70.9 bits (166), Expect = 8e-14
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ R
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66
Score = 66.5 bits (155), Expect = 2e-12
Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMT 427
+ +L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 428 Q 430
+
Sbjct: 126 E 126
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 47.6 bits (108), Expect = 8e-07
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 260 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 421
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 176
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.0 bits (104), Expect = 2e-06
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 433
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT++
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTEL 137
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 185
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 4e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
Score = 36.3 bits (80), Expect = 0.002
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 284 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 430
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ +
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIME 122
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.17
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 232 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.1 bits (62), Expect = 0.31
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 273 YLRVRILFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 154
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 0.70
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -3
Query: 266 GSGYSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 93
G G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 0.93
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
G+ PRA F ++ P H G+++ M KD G+E S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPK 539
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 235 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 119
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQ 430
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQ 167
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 335 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQI 433
+Y L E+HP+LLT+ A L P+ + ++ +I
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI 1433
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 117 TYRSHCLLPTRQLLRRTS*ISEI 49
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 22.2 bits (45), Expect(2) = 6.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 254 SILTLKYPIEHGIVTN 301
+I+T YP HGIV+N
Sbjct: 124 TIVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 6.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 296 TNWDDMEKIWHHTFYNELRVAPEEHP 373
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 6.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 102 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 254
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAG 137
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,995
Number of Sequences: 5004
Number of extensions: 41547
Number of successful extensions: 115
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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