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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0966
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   130   9e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    74   1e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    71   6e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    71   8e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    48   8e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    46   2e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    39   4e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.17 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.31 
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   0.70 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   0.93 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.6  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   2.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   2.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   2.8  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    22   6.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   6.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  130 bits (314), Expect = 9e-32
 Identities = 56/62 (90%), Positives = 59/62 (95%)
 Frame = +2

Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
           ++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120

Query: 428 QI 433
           QI
Sbjct: 121 QI 122



 Score =  126 bits (305), Expect = 1e-30
 Identities = 56/61 (91%), Positives = 60/61 (98%)
 Frame = +3

Query: 72  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 252 R 254
           R
Sbjct: 62  R 62


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 27/60 (45%), Positives = 47/60 (78%)
 Frame = +2

Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 430
           +S+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE P+NP ANREKM +
Sbjct: 62  RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121



 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +3

Query: 78  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VGDEA++ 
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61

Query: 252 R 254
           R
Sbjct: 62  R 62


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 71.3 bits (167), Expect = 6e-14
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = +2

Query: 263 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 433
           +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +I
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEI 145



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 239
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+  +
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 70.9 bits (166), Expect = 8e-14
 Identities = 31/55 (56%), Positives = 40/55 (72%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +VG EAQ+ R
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66



 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = +2

Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMT 427
           + +L ++ PIE GI+ NW DME+IW + + + +L   PEEHP+LLTE PL    N+EK+ 
Sbjct: 66  RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125

Query: 428 Q 430
           +
Sbjct: 126 E 126


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = +2

Query: 260 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 421
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 176
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 20/53 (37%), Positives = 32/53 (60%)
 Frame = +2

Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 433
           P E  +++NWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT++
Sbjct: 86  PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTEL 137



 Score = 35.9 bits (79), Expect = 0.003
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 185
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245
           EE+ +LV+D GS   + G+AG+++P  + PS      + GV   +  ++ YV DE Q
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58



 Score = 36.3 bits (80), Expect = 0.002
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 284 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 430
           +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +
Sbjct: 74  NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIME 122


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -1

Query: 232 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
           PT  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 273 YLRVRILFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 154
           Y +   L   +  L+ K+PS PY  SRP   A   S  TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 23/58 (39%), Positives = 28/58 (48%)
 Frame = -3

Query: 266 GSGYSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 93
           G G +F  CLI++IR  +SH            D  EHG   II C T L   G I+YY
Sbjct: 49  GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
           G+  PRA F  ++  P H G+++ M  KD   G+E  S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPK 539


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 235 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 119
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQ 430
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQ 167


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 335  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQI 433
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI 1433


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 117 TYRSHCLLPTRQLLRRTS*ISEI 49
           TYR H  +PT  LL  T  +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 22.2 bits (45), Expect(2) = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 254 SILTLKYPIEHGIVTN 301
           +I+T  YP  HGIV+N
Sbjct: 124 TIVTGLYPESHGIVSN 139



 Score = 20.6 bits (41), Expect(2) = 6.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 296 TNWDDMEKIWHHTFYNELRVAPEEHP 373
           T WD  E IW +   N +R A    P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +3

Query: 102 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 254
           N +GM         + R  F S VG  +     VG       Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFAG 137
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,995
Number of Sequences: 5004
Number of extensions: 41547
Number of successful extensions: 115
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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