Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0965
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   1.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   1.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   7.5  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.5  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.5  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.5  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   7.5  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.9  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   9.9  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 420 NVDCSQAIEHYKLNADPLKNPYVPKQKPEI 509
           N D   ++EH K++ D L N  + K++ EI
Sbjct: 520 NTDADVSLEHAKISFDSLDNSVIVKKEEEI 549


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 432 SQAIEHYKLNADPLKNPY 485
           SQA +HYKL+ + L+N Y
Sbjct: 246 SQAAQHYKLDVNSLRNAY 263


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 521  VVPGDFRFLFRHVGIFQWISVQFVMFNGL 435
            +   DF+ L    G FQW+ +Q   F+ L
Sbjct: 1631 IYDSDFKTLVSEEGSFQWVKLQPTNFDSL 1659


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 170 SCSLRGFLIKACSNWRP*GSYLCK*AASETTPQSSAPV 57
           +C L G +   CS  R  G  +C+   ++T   S+ P+
Sbjct: 129 NCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPL 166


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 148  RKPLREHEKPQDLRNVPGTPGVDYPIYHS 234
            R+P R+   PQ   NVPGT     PI  S
Sbjct: 935  RRPPRQLIPPQQSTNVPGTSKPSGPITSS 963


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 163 EHEKPQDLRNVPGTPGVDYPIYH-SVPETRFSVSTCRYTLECTRTL 297
           EH  P+D+R+   TP    P+Y+ S  +T    ++  Y L  T +L
Sbjct: 550 EHGSPKDIRSAASTPA--NPVYNRSSSQTSKGYNSSDYDLLRTHSL 593


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 388 SNRVPLVQ-RNEAPW*PSRPSWHTW 317
           S R PL+    E P  PSR +W TW
Sbjct: 3   SERDPLLPVHGEGPESPSRRNWKTW 27


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 214 DYPIYHSVPETRFSVSTCRYTLECTR 291
           DY +Y+SVP     V+ CR  L C R
Sbjct: 239 DY-LYYSVPCPWLQVNLCRILLACER 263


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 364 SAPTELCSTRPSSPATGGTTWIAHRPLNIT 453
           + PTE  ST+PS  A   T   + RP   T
Sbjct: 451 AVPTEASSTKPSEAAEESTPRFSVRPNKFT 480


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 474 KNPYVPKQKPEITRNNPEEFNIP 542
           KN Y+PK K  I  N+P +  IP
Sbjct: 242 KNKYLPKIKKWIDENSPGDTLIP 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,954
Number of Sequences: 5004
Number of extensions: 44758
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)