Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0965
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1053 - 10840558-10841085,10841363-10841528,10841571-108417...    30   1.4  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   4.4  
05_01_0555 + 4867494-4867577,4868987-4869607                           28   5.8  
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546     28   5.8  
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458...    27   7.6  

>12_01_1053 -
           10840558-10841085,10841363-10841528,10841571-10841787,
           10842321-10842420
          Length = 336

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 180 GPAQRSRNPWRGLPHLPLRSGDSILCEHVPIHP 278
           GP Q  R P RGL H PL      L + +P+ P
Sbjct: 196 GPPQGRRLPERGLRHRPLHHRHHHLLQRLPLRP 228


>09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,
            3067535-3067648,3068614-3068718,3068930-3069064,
            3069148-3069203,3069277-3069382,3069515-3069631,
            3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 432  SQAIEHYKL--NADPLKNPYVPKQKPEITRNNPEEFN 536
            +QA+   K+  N + LK P +PK  P   R+NP E N
Sbjct: 894  TQAVPPAKVVQNGNSLKLPTLPKLNPAAQRSNPTESN 930


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 25  GEMGKAVLRALTGALLCGVVSDAAYLQRYEPYGLQF 132
           G  G  V++A+T  +   V + AAY  R EP+ L F
Sbjct: 78  GGGGGRVIQAITMLVATAVTAQAAYRARREPWDLAF 113


>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
          Length = 532

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 336 REGHQGASFLCTNGTLFDQAKFACDWWYNVDC-SQAIEHYKLNADPLKNPYVPKQKPEIT 512
           ++GH G  F+C + T+ D  + A      V C + +I  +     P+K   + +++ +  
Sbjct: 329 KKGHPGVLFVCNHRTVLDPVEVAVALRRKVSCVTYSISKFSELISPIKAVALSREREKDA 388

Query: 513 RN 518
            N
Sbjct: 389 EN 390


>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
            34045969-34046092,34046168-34046294,34046821-34046882,
            34046972-34048023,34048167-34048556,34048667-34052628,
            34052710-34052796,34052885-34053004,34053096-34053152
          Length = 2122

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 118  YGLQFEQALIRKPLREH---EKPQDLRNVPGTPGVDYPIYH 231
            YG+  E+      + +H   +KP  +RN+P  P VD    H
Sbjct: 1991 YGISMEENQFEPKVEDHLLIKKPVSIRNIPRNPLVDAVAAH 2031


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,521,508
Number of Sequences: 37544
Number of extensions: 327364
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)