Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0965
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.051
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 30 1.5
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 28 5.9
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 27 7.8
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 255 CEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDC 431
C++ P G Y + C+ + CH+ ++ C G L+++ CDW NVDC
Sbjct: 76 CKYKP--DGEYRDPYDACRGFIHCHNYNASYKP----CPGGLLYNEKTKQCDWPRNVDC 128
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 32.3 bits (70), Expect = 0.27
Identities = 24/87 (27%), Positives = 33/87 (37%)
Frame = +3
Query: 243 DSILCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 422
D+ C+ P G YA+ C ++ C H+ C G + K ACDW
Sbjct: 1234 DTYFCKEKP--NGHYADPRD-CSRFYQCD---AFHRAFLHRCPAGLKWSVKKTACDWPRY 1287
Query: 423 VDCSQAIEHYKLNADPLKNPYVPKQKP 503
VDC + + P P P KP
Sbjct: 1288 VDCDRT-----TSTPPTPTPLTPTTKP 1309
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 243 DSILCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 422
D+ C+ P G YA+ C ++ C H+ C+ G + K CDW N
Sbjct: 779 DTTFCKDKP--NGYYADPRD-CSRFYQCD---AFHRAFLHRCSPGLKWSITKTTCDWPRN 832
Query: 423 VDCSQ 437
VDC +
Sbjct: 833 VDCDR 837
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +3
Query: 243 DSILCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 422
D+ C+ P H G YA+ C ++ C H+ C +G + K ACD
Sbjct: 1339 DTTFCKDRP-H-GHYADPRD-CSRFYQCD---ASHKTFLHRCPDGLKWSVKKTACDLPLY 1392
Query: 423 VDCSQAIEHYKLN-ADPLKNPYVPKQKP 503
VDC + I P +P P KP
Sbjct: 1393 VDCDRTIPTVATGLPSPSPSPPTPTPKP 1420
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 279 GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQ 437
G YA+ + C ++ C+ E C G L+ K CD+ + VDCS+
Sbjct: 574 GYYADPKD-CAQFYFCYGSAESLLSR---CPRGLLWSVVKKTCDYPHLVDCSR 622
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 33/87 (37%)
Frame = +3
Query: 243 DSILCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 422
D+ C+ P G YA+ C ++ C H+ C G + K ACDW
Sbjct: 884 DTTFCKDKP--NGHYADPRD-CSKFYQCD---AFHRAFLHRCPAGLKWSVKKTACDWPRY 937
Query: 423 VDCSQAIEHYKLNADPLKNPYVPKQKP 503
VDC + + P + P KP
Sbjct: 938 VDCDRT-----TSTPPTPTTHTPTIKP 959
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 243 DSILCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 422
D+ C+ P G YA+ C ++ C H+ C G + K ACDW
Sbjct: 1134 DTTFCKDKP--NGHYADPRD-CSRFYQCD---AFHKTFLHRCPAGLKWSVKKTACDWPRY 1187
Query: 423 VDCSQ 437
VDC +
Sbjct: 1188 VDCDR 1192
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 279 GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQ 437
G YA+ C + +C +G + C + +D AK C+W VDC Q
Sbjct: 524 GKYADANN-CNGFVMCSNGYIYYMD----CPSNLRYDPAKGRCEWADTVDCGQ 571
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 243 DSILCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 422
D + CE G+YA E C + +C G H+ C G +F+ CDW +
Sbjct: 454 DGMFCERNG--DGIYAEKEN-CYGFVLCGGGI-AHKKT---CPPGLIFNTDLMVCDWSHE 506
Query: 423 VDCS 434
V C+
Sbjct: 507 VKCN 510
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 294 VETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIEHYKLNAD-P 470
++T V H G G+ +S TN D+A+++C N ++ E L + P
Sbjct: 2100 LDTSPDRITVTHPGSYGNTTSSLTITNLVRTDEARYSCK-AINAAGEKSSEQGLLTVNYP 2158
Query: 471 LKNPYVPKQKPEITRNNPEEFNI 539
K ++ KPE TRN + +
Sbjct: 2159 PK--FLESLKPEETRNETDNLTL 2179
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 321 VCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIEHYKLNAD-PLKNPYVPKQ 497
V H G G+ +S TN D+A+++C N ++ E L + P K ++
Sbjct: 1910 VTHPGSYGNTTSSLTITNLVRTDEARYSCK-AINAAGEKSSEQGLLTVNYPPK--FLESL 1966
Query: 498 KPEITRNNPEEFNI 539
KPE TRN + +
Sbjct: 1967 KPEETRNETDNLTL 1980
>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 459 SVCNVQWPVSNPRCTTSRRRTWPGRTEFRW 370
S +++WPVS P S RT P ++ +W
Sbjct: 130 SPSDIKWPVSYPPRQISNGRTLPSPSDSKW 159
>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
Length = 114
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 435 QAIEHYKLNADPLKNPYVPKQKPEITRNNPEEF 533
Q +++ +L DP +N ++P+ K E ++P++F
Sbjct: 31 QKMQYERLMRDPERNVHIPETKKEWKPSDPKDF 63
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 55 LTGALLCGVVSDAAYLQRYEPYGLQFEQALIRK-PLREHEKPQDLRNVPGTPGVDYPIYH 231
+T ++ G+V DAAY Y+ + F+ + ++ + N+ G D +YH
Sbjct: 198 VTKRMIFGIVEDAAYNGHYKKNPINFQMPHLNSIEVKVDGNKTPISNLKNIDGQDVDLYH 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,375
Number of Sequences: 59808
Number of extensions: 384599
Number of successful extensions: 1354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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