Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0965
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ... 29 1.7
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 29 2.2
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 29 2.2
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 3.0
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 28 3.9
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z72506-3|CAA96617.1| 310|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 28 5.2
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 28 5.2
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 28 5.2
>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
protein Y59E9AL.4 protein.
Length = 1100
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 274 CIGTCSQRIESPERSGRWGSPRQGFRERCAGPVASR 167
C GT + + ++ GRW P+Q F++R +G +R
Sbjct: 841 CYGTVVE-VRISKKGGRWIRPKQNFKKRTSGVSTNR 875
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
protein LIN-59 protein.
Length = 1312
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +3
Query: 162 RAREATGPAQRSRNPWRGLPH-LPLRSGDSILCEHVPIHP-GMYANVETGCQAYHVCHDG 335
++++A A R+R P +P + GD+ L ++P G Y + + ++Y G
Sbjct: 907 QSKKAKDNAPRARALSTSCPSPVPSKRGDADLSYLESLYPIGSY-DPDDAWESYSTNKKG 965
Query: 336 REGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIEHYKLNADPLKNP 482
L GT+ C +W +VDC Q + A KNP
Sbjct: 966 NAVRCICGALDEEGTMVQCD--TCHFWLHVDCCQYVVRSNEKAQKSKNP 1012
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +3
Query: 162 RAREATGPAQRSRNPWRGLPH-LPLRSGDSILCEHVPIHP-GMYANVETGCQAYHVCHDG 335
++++A A R+R P +P + GD+ L ++P G Y + + ++Y G
Sbjct: 907 QSKKAKDNAPRARALSTSCPSPVPSKRGDADLSYLESLYPIGSY-DPDDAWESYSTNKKG 965
Query: 336 REGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIEHYKLNADPLKNP 482
L GT+ C +W +VDC Q + A KNP
Sbjct: 966 NAVRCICGALDEEGTMVQCD--TCHFWLHVDCCQYVVRSNEKAQKSKNP 1012
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 123 PPVRTGFNQKAPKRAREATGPAQRSRNPWR 212
PP RT + P+R R + P +RSR+P R
Sbjct: 107 PPRRTRRSPSPPRRRRISRSPVRRSRSPPR 136
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 117 LRPPVRTGFNQKAPKRAREATGPAQRSRNPWRGLP 221
+RP RTG +Q P + P +++PWR P
Sbjct: 936 MRPVNRTGNSQAPPWQRSRQPSPPPSNQSPWRQQP 970
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 222 HLPLRSGDSI-LCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTN 374
+LPL+ G ++ E + A V+ GC C D G+ G SF+C +
Sbjct: 2688 NLPLKRGGAMDENEESIVSISNMAGVQDGCDLRITCADLPAGYCGGSFVCVD 2739
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 222 HLPLRSGDSI-LCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTN 374
+LPL+ G ++ E + A V+ GC C D G+ G SF+C +
Sbjct: 2688 NLPLKRGGAMDENEESIVSISNMAGVQDGCDLRITCADLPAGYCGGSFVCVD 2739
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical protein
W02B9.1a protein.
Length = 1223
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 222 HLPLRSGDSI-LCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTN 374
+LPL+ G ++ E + A V+ GC C D G+ G SF+C +
Sbjct: 991 NLPLKRGGAMDENEESIVSISNMAGVQDGCDLRITCADLPAGYCGGSFVCVD 1042
>Z72506-3|CAA96617.1| 310|Caenorhabditis elegans Hypothetical
protein F07A5.2 protein.
Length = 310
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 463 LIH*KIPTCRNRNRKSPGTTRKS 531
L+ +I + RNR+ KSPG++RKS
Sbjct: 112 LLQAEIESRRNRSNKSPGSSRKS 134
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 222 HLPLRSGDSI-LCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTN 374
+LPL+ G ++ E + A V+ GC C D G+ G SF+C +
Sbjct: 2688 NLPLKRGGAMDENEESIVSISNMAGVQDGCDLRITCADLPAGYCGGSFVCVD 2739
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 222 HLPLRSGDSI-LCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTN 374
+LPL+ G ++ E + A V+ GC C D G+ G SF+C +
Sbjct: 2688 NLPLKRGGAMDENEESIVSISNMAGVQDGCDLRITCADLPAGYCGGSFVCVD 2739
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 222 HLPLRSGDSI-LCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTN 374
+LPL+ G ++ E + A V+ GC C D G+ G SF+C +
Sbjct: 991 NLPLKRGGAMDENEESIVSISNMAGVQDGCDLRITCADLPAGYCGGSFVCVD 1042
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,038
Number of Sequences: 27780
Number of extensions: 276078
Number of successful extensions: 858
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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