Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0965
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.22 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 423  VDCSQAIEHYKLNADPLKN---PYVPKQKPEITRNNPEEFN 536
            +DCS   E+Y+L     KN   P V  +  + + NN ++ N
Sbjct: 963  IDCSTQSEYYELEVKDQKNGKPPSVVSRSTQTSANNDKDTN 1003


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 429 CSQAIEHYKLNADPLKNPYVPKQKPEITRNNPEEFNI 539
           C Q    ++L  + +  PYVP+ K  +   + EE N+
Sbjct: 266 CPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEEGNV 302


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 429 CSQAIEHYKLNADPLKNPYVPKQKPEITRNNPEEFNI 539
           C Q    ++L  + +  PYVP+ K  +   + EE N+
Sbjct: 181 CPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEEGNV 217


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 429 CSQAIEHYKLNADPLKNPYVPKQKPEITRNNPEEFNI 539
           C Q    ++L  + +  PYVP+ K  +   + EE N+
Sbjct: 500 CPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEEGNV 536


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 10  ASNMCGEMGKAVLRALTGALLCGVVSDAA 96
           AS++      A   + TGAL  G+VSD A
Sbjct: 295 ASDILWTQASAKAISETGALFFGLVSDTA 323


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 203 PLAWTTPSTTPFRRLDS 253
           P+ WT P    FR+  S
Sbjct: 801 PVRWTAPEAIAFRKFTS 817


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,521
Number of Sequences: 438
Number of extensions: 3698
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)