Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0965
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    32   0.22 
At4g38560.1 68417.m05459 expressed protein                             29   2.8  
At1g36990.1 68414.m04611 expressed protein contains PS00070: Ald...    29   2.8  
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    28   4.8  
At2g29910.2 68415.m03633 F-box family protein contains F-box dom...    28   4.8  
At2g29910.1 68415.m03632 F-box family protein contains F-box dom...    28   4.8  
At5g27610.1 68418.m03308 myb family transcription factor contain...    27   6.4  
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ...    27   6.4  
At5g64050.1 68418.m08042 glutamate-tRNA ligase family protein / ...    27   8.4  
At4g36280.1 68417.m05159 ATP-binding region, ATPase-like domain-...    27   8.4  

>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 387 DQAKFACDWWYNV-DCSQAIEHYKLNADPL-KNPYVPK 494
           DQ ++ACD W    D S +++ Y L++ P+ +  YVPK
Sbjct: 378 DQGRYACDSWNTPRDSSFSVDRYGLSSAPVEREQYVPK 415


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 432 SQAIEHYKLNADPLKNPYVPKQKPEITRNNPEEFNI 539
           +Q + H  L +  LK+P   + +P I +  P  FNI
Sbjct: 196 TQPVPHRSLESAGLKSPQKGETRPHIPQTQPTSFNI 231


>At1g36990.1 68414.m04611 expressed protein contains PS00070:
           Aldehyde dehydrogenases cysteine active site; similar to
           high molecular mass nuclear antigen (GI:2754696) [Gallus
           gallus];similar to streptococcal hemagglutinin
           (GI:8885520) [Streptococcus gordonii] similar to
           proteophosphoglycan (GI:5420389) [Leishmania major]
          Length = 581

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 28  EMGKAVLRALTGALLCGVVSDAAYLQRYEPYGLQFEQALIRKPLREHEKPQ 180
           E+   + +A TG+L     +  +      P GL   +AL++ P R H  PQ
Sbjct: 236 EVPNVIEKACTGSLTSPKANAVSAGTLTGPSGLNMAEALVQAPARTHTPPQ 286


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 391 WSNRVPLVQRNEAPW*PSRPSWH 323
           W    P     E+PW P RP WH
Sbjct: 189 WKAAKPDEPSWESPWGPGRPGWH 211


>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 335

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 336 REGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIE 446
           RE H G  F   N    D + +  D WY VD    +E
Sbjct: 216 REAHDGCWFRTPNLVYLDYSSYVPD-WYEVDLGSLVE 251


>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 352

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 336 REGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIE 446
           RE H G  F   N    D + +  D WY VD    +E
Sbjct: 216 REAHDGCWFRTPNLVYLDYSSYVPD-WYEVDLGSLVE 251


>At5g27610.1 68418.m03308 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 969

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 297 QRSRTFQGVSARAHRESSLRNGVVDGVVHA 208
           ++S T + VS   HRE + + G+ D ++HA
Sbjct: 347 KKSNTLETVSTSHHREKAKQAGLEDNLLHA 376


>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 315

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 522 GCSW*FPVSVSARRDFSMDQRSVCNVQWP 436
           GCSW  P+  + R  FS   R +    WP
Sbjct: 250 GCSWSSPMRSAVRLPFSSSLRPIQAATWP 278


>At5g64050.1 68418.m08042 glutamate-tRNA ligase family protein /
           glutamyl-tRNA synthetase family protein similar to
           SP|P22250 from Bacillus subtilis, SP|P22249 from
           Bacillus stearothermophilus; contains Pfam tRNA
           synthetases class I (E and Q), catalytic domain PF00749
          Length = 570

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 245 VSGTEW*MG*STPGV-PGTLRR--SCGFSCSLRGFLIKACS 132
           V GT W    S P + P  LRR  S  F CS R F + ACS
Sbjct: 5   VYGTPWLRVRSLPELAPAFLRRRQSSLFYCSRRSFAVVACS 45


>At4g36280.1 68417.m05159 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 626

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 396 KFACDWWYNVDCSQAIEHYKLNADPLKNPYVPKQKPEITRNNP 524
           K    +WY+         Y++ AD  K   +P Q P I+  NP
Sbjct: 456 KIVYSYWYSHCHLLGYHKYQMPADKSKKIAIPDQPPTISTVNP 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,118,262
Number of Sequences: 28952
Number of extensions: 248337
Number of successful extensions: 732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)