Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0964
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.0  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   5.2  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   5.2  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   5.2  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   9.1  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    25   9.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 599 VITFNLTSSFSEFLQIPLQQY 537
           ++ FNL+ S   F Q+PL++Y
Sbjct: 58  ILYFNLSKSMVSFAQVPLEEY 78


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 100 GGRAHSPPGVKWLLEPMDIYN 38
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 41  VDVHGLQ*PLNTRWAVSSSTHLSNKKTSIMSPWASSMLLDNGSKK 175
           +DVH  + P N +W+ S + ++        +   +S  L  G+K+
Sbjct: 74  IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKR 118


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 629 ILLFWREQD*VITFNLTSSFSEFLQIPLQQY 537
           I + W EQ  V+  NL   F ++  +PL  Y
Sbjct: 311 IEMLWEEQKRVVGENLELKFDQYKDMPLLNY 341


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -1

Query: 240 LVKLEKNISRFLTAIEVRRANCFFEPLSRSIDDAQGDIIEVF----LLLRWVDELTAHLV 73
           LVK+EK++ R    + + R  C    LS   +D   DI ++     +LL  + EL  H+V
Sbjct: 60  LVKMEKDLLRSYENVAMERKEC-ANQLSYWGEDCDDDISDISDKLGVLLYEIGELEEHMV 118


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 601 R*SLLISRQAFRNFYKFHCNNTIKHDN 521
           R   LI+ ++  +  K HC N+  HDN
Sbjct: 249 RGDFLIANESTGHLMKNHCRNSSPHDN 275


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 290 TSCTCCN--GTIAIVIIISWLNLKRIF 216
           TSC+       +A+V + SW+NL R+F
Sbjct: 136 TSCSFSTLMSILALVYVPSWINLPRLF 162


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 183 ANCFFEPLSRSIDDAQGDIIEVFLLLRWVDELTAHLVLSGYWS 55
           A C F  + RSI  AQ +   VF L +  +   AH ++S + S
Sbjct: 496 AMCLFSGVLRSIYSAQNNSARVFELSKNSNTAPAHGIISIFTS 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,509
Number of Sequences: 5004
Number of extensions: 49241
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)