BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0964 (636 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 2.3 SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 27 3.0 SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 26 5.2 SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 26 5.2 SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 5.2 SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 25 9.1 SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 25 9.1 SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.1 >SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual Length = 815 Score = 27.1 bits (57), Expect = 2.3 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -2 Query: 599 VITFNLTSSFSEFLQIPLQQY 537 ++ FNL+ S F Q+PL++Y Sbjct: 58 ILYFNLSKSMVSFAQVPLEEY 78 >SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe|chr 2|||Manual Length = 310 Score = 26.6 bits (56), Expect = 3.0 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 100 GGRAHSPPGVKWLLEPMDIYN 38 GG H P V WLL P DIY+ Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254 >SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 335 Score = 25.8 bits (54), Expect = 5.2 Identities = 11/45 (24%), Positives = 22/45 (48%) Frame = +2 Query: 41 VDVHGLQ*PLNTRWAVSSSTHLSNKKTSIMSPWASSMLLDNGSKK 175 +DVH + P N +W+ S + ++ + +S L G+K+ Sbjct: 74 IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKR 118 >SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces pombe|chr 1|||Manual Length = 495 Score = 25.8 bits (54), Expect = 5.2 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -2 Query: 629 ILLFWREQD*VITFNLTSSFSEFLQIPLQQY 537 I + W EQ V+ NL F ++ +PL Y Sbjct: 311 IEMLWEEQKRVVGENLELKFDQYKDMPLLNY 341 >SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pombe|chr 1|||Manual Length = 383 Score = 25.8 bits (54), Expect = 5.2 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = -1 Query: 240 LVKLEKNISRFLTAIEVRRANCFFEPLSRSIDDAQGDIIEVF----LLLRWVDELTAHLV 73 LVK+EK++ R + + R C LS +D DI ++ +LL + EL H+V Sbjct: 60 LVKMEKDLLRSYENVAMERKEC-ANQLSYWGEDCDDDISDISDKLGVLLYEIGELEEHMV 118 >SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual Length = 503 Score = 25.0 bits (52), Expect = 9.1 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -3 Query: 601 R*SLLISRQAFRNFYKFHCNNTIKHDN 521 R LI+ ++ + K HC N+ HDN Sbjct: 249 RGDFLIANESTGHLMKNHCRNSSPHDN 275 >SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 308 Score = 25.0 bits (52), Expect = 9.1 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = -2 Query: 290 TSCTCCN--GTIAIVIIISWLNLKRIF 216 TSC+ +A+V + SW+NL R+F Sbjct: 136 TSCSFSTLMSILALVYVPSWINLPRLF 162 >SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1367 Score = 25.0 bits (52), Expect = 9.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -1 Query: 183 ANCFFEPLSRSIDDAQGDIIEVFLLLRWVDELTAHLVLSGYWS 55 A C F + RSI AQ + VF L + + AH ++S + S Sbjct: 496 AMCLFSGVLRSIYSAQNNSARVFELSKNSNTAPAHGIISIFTS 538 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,582,509 Number of Sequences: 5004 Number of extensions: 49241 Number of successful extensions: 106 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 106 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 283719918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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