Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0964
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30943| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)         30   1.8  
SB_29097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_30943| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
          Length = 354

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 79  VGCELVHPSKQ*KNFNNVALGIVNASRQRLKETVCSSNFN 198
           +GC  +HP    + F+N+   I++ S +R KET   S+ N
Sbjct: 99  IGCLYIHPLYDCEKFHNMLQEILDNSNKRGKETFVVSDAN 138


>SB_29097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 222 NISRFLTAIEVRRANCFFEPLSRSIDDAQ--GDIIEVFLLLRWVDELTAHLVLSG 64
           N+      IEVRRA    +P     +     GD+IEVF +LR   E    L L G
Sbjct: 77  NLGNIPEGIEVRRAEDPSKPTIPIFERLNNGGDLIEVFTILRLKREFLRQLPLKG 131


>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 170 LSRCREALTMP-KATLLKFFYCLDGWTSSQ 84
           + RCR +L    +AT L   YC DGW  S+
Sbjct: 169 VERCRRSLNFALEATWLLEAYCADGWLPSE 198


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 22  WVAHLRCRCPWAPVTT*HQVGCELVHPSKQ*KN 120
           W+ H  CR PW  +    ++  + V PS   +N
Sbjct: 17  WIVHCTCREPWGRIKRKEKLSSKRVWPSPNPRN 49


>SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -1

Query: 237 VKLEKNISRFLTAIEVRRANCFFEPLSRSIDDAQGDIIEVFLLLRWVDELTAHLVLSGYW 58
           +K  K I + L +  +     FF+    SIDD+   ++ +FL   +   + A LV++ Y 
Sbjct: 272 IKAAKTIHQRLLSSILAAPISFFDITPYSIDDSLPFMLNIFLAQAYF--VVASLVITCYG 329

Query: 57  SPW 49
            PW
Sbjct: 330 LPW 332


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 120 LQ*CRLGHRQCFSTTAQRNSLLV*LQWQSKTLKYSFQV*PTNYNYNRNCTITTRTARHTC 299
           L+ CR   R C  T   R   L   ++     +Y+ +     Y   R C  T RT R+T 
Sbjct: 41  LRPCRYTLRTCRYTLRPRRYTLSPCRYTLSPCRYTLR---PRYCTLRPCRYTLRTCRYTL 97

Query: 300 RP-ITILRSMPYTI 338
           RP    LR   YT+
Sbjct: 98  RPRHYTLRPRRYTL 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,374
Number of Sequences: 59808
Number of extensions: 366882
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)