Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0964
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 287 SSHVPPYNDITVNAVYYFRPKTKLGLNEDIHNTRLISASNVL 412
           +SH P Y D++V  + +F P  ++GL   ++ T L+S    L
Sbjct: 85  NSHNPEYIDLSVQLIVWFYPLAQIGLTMSVYVTILVSVHRYL 126


>AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.8 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 31  HLRCRCPWAPVTT*HQVGCELVHPSKQ*KNFNNVALGI 144
           H++ RC + P  T     C  +HP+   KNF N   GI
Sbjct: 499 HVKERCIFWPKCTKGDT-CAFMHPTTNCKNFPNCTFGI 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,679
Number of Sequences: 27780
Number of extensions: 279608
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)