Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0964
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.5  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   4.3  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   4.3  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   4.3  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   4.3  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   4.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   4.3  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   4.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   4.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   4.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +3

Query: 249 NYNRNCTITTRTARHTCRPI--TILRSMPYTIF 341
           NY  +CTI   T   TC  I   + R + Y +F
Sbjct: 186 NYTTDCTIEYSTGNFTCIQIVFNLRRRLGYHLF 218


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 429 SNGISNKLSVCKILDEKYSFA 491
           SN I   LSVCK L E+  +A
Sbjct: 78  SNPIKTALSVCKSLIERQVYA 98


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 89  YNYNNYNNNYKPLYYNI 105


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 89  YNYNNYNNNYKPLYYNI 105


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 89  YNYNNYNNNYKPLYYNI 105


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 89  YNYNNYNNNYKPLYYNI 105


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 322 YNYNNYNNNYKPLYYNI 338


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 322 YNYNNYNNNYKPLYYNI 338


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 322 YNYNNYNNNYKPLYYNI 338


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 322 YNYNNYNNNYKPLYYNI 338


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 YHYNTYSSSHVPPYNDI 316
           Y+YN Y++++ P Y +I
Sbjct: 311 YNYNNYNNNYKPLYYNI 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,081
Number of Sequences: 438
Number of extensions: 3448
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)