Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0964
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family...    29   3.4  
At5g49830.1 68418.m06171 expressed protein                             28   6.0  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    28   6.0  
At1g54650.1 68414.m06232 expressed protein similar to Actin-bind...    28   6.0  

>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 418

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 266 YHYNTYSSSHV--PPYNDITVNAVYYFR 343
           Y+   Y S H   PPYN+ T+ +VY+ R
Sbjct: 127 YNERHYRSGHFERPPYNESTIRSVYHVR 154


>At5g49830.1 68418.m06171 expressed protein
          Length = 752

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 305 YNDITVNAVYYFRPKTKLGLNEDIHN-TRLISASNVLS 415
           +NDI V+A+     KTK G N D+H+ T  +SA +V S
Sbjct: 709 FNDICVDAMERLSGKTK-GNNGDVHSPTASVSAQSVSS 745


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 94  VHPSKQ*KNFNNVALGIVNASRQRLKETVCSSNFNGSQ 207
           V P K   N   V + +  A+++R   T C  N +G Q
Sbjct: 255 VQPKKNGSNLEEVDISMAQAAKRRQGPTCCDMNLSGIQ 292


>At1g54650.1 68414.m06232 expressed protein similar to Actin-binding
           protein ABP140 (Swiss-Prot:Q08641) [Saccharomyces
           cerevisiae]
          Length = 299

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -1

Query: 267 YNCDCNYN*LVKLEKNISRFLTAIEVRRANC 175
           Y CDC+ + LV+ ++NI R +++++   + C
Sbjct: 110 YACDCSSDALVRTKENIDRAISSVDNFHSFC 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,258,663
Number of Sequences: 28952
Number of extensions: 249297
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)