Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0963
(601 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 24 0.85
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 24 0.85
DQ659247-1|ABG47445.1| 980|Tribolium castaneum chitinase 7 prot... 24 0.85
AM292362-1|CAL23174.2| 398|Tribolium castaneum gustatory recept... 24 0.85
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF592538-1|ABQ95984.1| 582|Tribolium castaneum beta-N-acetylglu... 21 7.9
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 7.9
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 7.9
AJ850292-1|CAH64512.1| 539|Tribolium castaneum putative esteras... 21 7.9
AJ518941-1|CAD57735.1| 456|Tribolium castaneum homothorax protein. 21 7.9
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.2 bits (50), Expect = 0.85
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478
+ +TLG+TI + +NL+ IPT
Sbjct: 238 DSGEKLTLGVTILLSLTVFLNLVAEKIPT 266
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.2 bits (50), Expect = 0.85
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478
+ +TLG+TI + +NL+ IPT
Sbjct: 238 DSGEKLTLGVTILLSLTVFLNLVAEKIPT 266
>DQ659247-1|ABG47445.1| 980|Tribolium castaneum chitinase 7
protein.
Length = 980
Score = 24.2 bits (50), Expect = 0.85
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 262 IEQPRTIKIAV----N*INNKEKKIHSKNKLSFRKI 357
IE+P +KI+V N + KK+H KN +K+
Sbjct: 484 IEKPAPVKISVQEVLNRVRKPTKKLHLKNSPISKKV 519
>AM292362-1|CAL23174.2| 398|Tribolium castaneum gustatory receptor
candidate 41 protein.
Length = 398
Score = 24.2 bits (50), Expect = 0.85
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 385 NIIKKYNLMNGIFFIKMCCYTTLICTKTSNLS 480
N + +Y + I + +C YT LI K SNL+
Sbjct: 166 NFVNEY--VQAIEVLYICSYTVLIRNKISNLN 195
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481
+ +TLG+TI + +NL+ +P
Sbjct: 238 DSGEKLTLGVTILLSLTVFLNLVAETLP 265
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481
+ +TLG+TI + +NL+ +P
Sbjct: 238 DSGEKLTLGVTILLSLTVFLNLVAETLP 265
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481
+ +TLG+TI + +NL+ +P
Sbjct: 238 DSGEKLTLGVTILLSLTVFLNLVAETLP 265
>EF592538-1|ABQ95984.1| 582|Tribolium castaneum
beta-N-acetylglucosaminidase NAG3 protein.
Length = 582
Score = 21.0 bits (42), Expect = 7.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 301 INNKEKKIHSKNKLSFRKINSIVSFVLFN 387
+ N+E I K K+SF V +L N
Sbjct: 86 LTNRESSIIDKTKISFNFSQGPVKIMLQN 114
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.0 bits (42), Expect = 7.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 307 NKEKKIHSKNKLSFRKINSIVSFVLFNII 393
NKE+K +L + S+ +F +FN +
Sbjct: 1250 NKEEKARIAKELIELRNKSVFAFFMFNAL 1278
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 21.0 bits (42), Expect = 7.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 307 NKEKKIHSKNKLSFRKINSIVSFVLFNII 393
NKE+K +L + S+ +F +FN +
Sbjct: 1250 NKEEKARIAKELIELRNKSVFAFFMFNAL 1278
>AJ850292-1|CAH64512.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 21.0 bits (42), Expect = 7.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 166 TEEKKPSHPYSDILQRQV 219
T+ P+HPY I +QV
Sbjct: 293 TQPVLPTHPYQIIKNKQV 310
>AJ518941-1|CAD57735.1| 456|Tribolium castaneum homothorax protein.
Length = 456
Score = 21.0 bits (42), Expect = 7.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 121 RELFIAGSDLCNSNDYH 71
RE +AG D+C+S ++
Sbjct: 104 REPGVAGGDVCSSESFN 120
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,212
Number of Sequences: 336
Number of extensions: 2624
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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