Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0963
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.1  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   8.5  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   8.5  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 412  NGIFFIKMCCYTTLICTKTSNLS 480
            N IF I   CYT  IC K   LS
Sbjct: 1301 NSIFLILSICYTINICVKVYGLS 1323


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 145 SCLIYLETEEKKPSHPYSDILQRQVSKL*FIK 240
           +C++ L +E  +PS+P+S+I +     L F+K
Sbjct: 110 ACML-LTSERTEPSYPFSEITEVSRGGLHFVK 140


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 96  SLPAINNSRQTFYRNLIMSNLLRN*RKKTFTSIF*YLTK 212
           SL A+ N  QT  +NL  S       +K+F ++F  L K
Sbjct: 634 SLEALKNENQTLLKNLEDSTARYEHLQKSFKNVFNQLRK 672


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = -3

Query: 215 CLCKISEYGCE--GFFS 171
           C+C+  EYGC   G+FS
Sbjct: 292 CMCRRDEYGCHLVGYFS 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,396
Number of Sequences: 5004
Number of extensions: 37991
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)