BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0963 (601 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.99 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.3 EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3 DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 5.3 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.3 DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 7.0 DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 7.0 DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 7.0 DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 7.0 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 7.0 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 24.2 bits (50), Expect = 0.99 Identities = 8/26 (30%), Positives = 17/26 (65%) Frame = -3 Query: 254 SVNNFFINYNLETCLCKISEYGCEGF 177 S++ F Y+++TC+ K+ + +GF Sbjct: 154 SIDVEFFPYDVQTCVLKLGSWTYDGF 179 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 23.0 bits (47), Expect = 2.3 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478 + +TLG+TI + +NL+ +PT Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPT 249 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 23.0 bits (47), Expect = 2.3 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478 + +TLG+TI + +NL+ +PT Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPT 249 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 23.0 bits (47), Expect = 2.3 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478 + +TLG+TI + +NL+ +PT Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPT 249 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 23.0 bits (47), Expect = 2.3 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478 + +TLG+TI + +NL+ +PT Sbjct: 289 DSGEKLTLGVTILLSLTVFLNLVAESMPT 317 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 21.8 bits (44), Expect = 5.3 Identities = 8/28 (28%), Positives = 15/28 (53%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481 + +TLG+TI + +NL+ +P Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLP 248 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 21.8 bits (44), Expect = 5.3 Identities = 8/28 (28%), Positives = 15/28 (53%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481 + +TLG+TI + +NL+ +P Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLP 248 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 21.8 bits (44), Expect = 5.3 Identities = 8/28 (28%), Positives = 15/28 (53%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481 + +TLG+TI + +NL+ +P Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLP 248 >DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine receptor beta2subunit protein. Length = 427 Score = 21.8 bits (44), Expect = 5.3 Identities = 7/16 (43%), Positives = 12/16 (75%) Frame = -2 Query: 117 NYLLQEATYVTVTIII 70 +Y + TYVT+TI++ Sbjct: 242 HYSMNSTTYVTLTIVL 257 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 21.8 bits (44), Expect = 5.3 Identities = 8/28 (28%), Positives = 15/28 (53%) Frame = -2 Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481 + +TLG+TI + +NL+ +P Sbjct: 289 DSGEKLTLGVTILLSLTVFLNLVAETLP 316 >DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.4 bits (43), Expect = 7.0 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = -2 Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352 NTIH + Y+ N N ++Y+ Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110 >DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.4 bits (43), Expect = 7.0 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = -2 Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352 NTIH + Y+ N N ++Y+ Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110 >DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.4 bits (43), Expect = 7.0 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = -2 Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352 NTIH + Y+ N N ++Y+ Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110 >DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.4 bits (43), Expect = 7.0 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = -2 Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352 NTIH + Y+ N N ++Y+ Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 21.4 bits (43), Expect = 7.0 Identities = 7/14 (50%), Positives = 13/14 (92%) Frame = +1 Query: 184 SHPYSDILQRQVSK 225 ++P+SD+ +R+VSK Sbjct: 326 NNPFSDVEERRVSK 339 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 142,629 Number of Sequences: 438 Number of extensions: 2630 Number of successful extensions: 16 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 17604432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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