Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0963
(601 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.99
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 7.0
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 7.0
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 7.0
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 7.0
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 7.0
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.99
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 254 SVNNFFINYNLETCLCKISEYGCEGF 177
S++ F Y+++TC+ K+ + +GF
Sbjct: 154 SIDVEFFPYDVQTCVLKLGSWTYDGF 179
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478
+ +TLG+TI + +NL+ +PT
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPT 249
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478
+ +TLG+TI + +NL+ +PT
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPT 249
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478
+ +TLG+TI + +NL+ +PT
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPT 249
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIPT 478
+ +TLG+TI + +NL+ +PT
Sbjct: 289 DSGEKLTLGVTILLSLTVFLNLVAESMPT 317
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481
+ +TLG+TI + +NL+ +P
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLP 248
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481
+ +TLG+TI + +NL+ +P
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLP 248
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481
+ +TLG+TI + +NL+ +P
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLP 248
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.8 bits (44), Expect = 5.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 117 NYLLQEATYVTVTIII 70
+Y + TYVT+TI++
Sbjct: 242 HYSMNSTTYVTLTIVL 257
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 564 EQSHNITLGLTIFVFFYNIINLLCNLIP 481
+ +TLG+TI + +NL+ +P
Sbjct: 289 DSGEKLTLGVTILLSLTVFLNLVAETLP 316
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352
NTIH + Y+ N N ++Y+
Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352
NTIH + Y+ N N ++Y+
Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352
NTIH + Y+ N N ++Y+
Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 420 NTIH*IVFFYDIEQNKRNDRIYF 352
NTIH + Y+ N N ++Y+
Sbjct: 88 NTIHNNNYKYNYNNNNYNKKLYY 110
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.4 bits (43), Expect = 7.0
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = +1
Query: 184 SHPYSDILQRQVSK 225
++P+SD+ +R+VSK
Sbjct: 326 NNPFSDVEERRVSK 339
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,629
Number of Sequences: 438
Number of extensions: 2630
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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