Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0962
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   3.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   4.0  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   7.0  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   7.0  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   7.0  

>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +1

Query: 325 YQKFLALMMLV---TGSINSLSTKWADILKSKGSDGEERYFN---HPFLQTLS 465
           Y K L LM+ V   T  +NS + ++ + L+S+GS+    Y N    P L++L+
Sbjct: 622 YGKVLDLMLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQLESLN 674


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 518 FVIPNLNTSKHSISPKNIDKVCKNGWLKYLSSPSDPFDFNISA 390
           F I  +++ KH  + KNI+K  K GWL       D  DF  SA
Sbjct: 75  FKIHYVSSPKHP-NYKNIEKYLKPGWL--FGQKVDSADFQYSA 114


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 391 ADILKSKGSDGEERYFNHPFLQTLSMFLGEMLC 489
           +++L SK  D   +YF    L  L +F+  +LC
Sbjct: 25  SNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLC 57


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 337 LALMMLVTGSINSLSTKWAD 396
           +A +++  G +NSLST+W D
Sbjct: 193 MAAVIVFHGLVNSLSTRWLD 212


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 49  NVKYKNHIFLIYRHCSYNKSSSINLVYL*LGK 144
           ++ Y+N ++ I +  S  K  S+N++ + +GK
Sbjct: 180 HISYQNGLYCIDKDKSLTKEPSVNIILMNVGK 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,145
Number of Sequences: 5004
Number of extensions: 55377
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)