BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0962 (641 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 3.0 SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 4.0 SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 25 7.0 SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 7.0 SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 7.0 >SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 836 Score = 26.6 bits (56), Expect = 3.0 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%) Frame = +1 Query: 325 YQKFLALMMLV---TGSINSLSTKWADILKSKGSDGEERYFN---HPFLQTLS 465 Y K L LM+ V T +NS + ++ + L+S+GS+ Y N P L++L+ Sbjct: 622 YGKVLDLMLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQLESLN 674 >SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT |Schizosaccharomyces pombe|chr 1|||Manual Length = 588 Score = 26.2 bits (55), Expect = 4.0 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -1 Query: 518 FVIPNLNTSKHSISPKNIDKVCKNGWLKYLSSPSDPFDFNISA 390 F I +++ KH + KNI+K K GWL D DF SA Sbjct: 75 FKIHYVSSPKHP-NYKNIEKYLKPGWL--FGQKVDSADFQYSA 114 >SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 347 Score = 25.4 bits (53), Expect = 7.0 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1 Query: 391 ADILKSKGSDGEERYFNHPFLQTLSMFLGEMLC 489 +++L SK D +YF L L +F+ +LC Sbjct: 25 SNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLC 57 >SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces pombe|chr 2|||Manual Length = 542 Score = 25.4 bits (53), Expect = 7.0 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 Query: 337 LALMMLVTGSINSLSTKWAD 396 +A +++ G +NSLST+W D Sbjct: 193 MAAVIVFHGLVNSLSTRWLD 212 >SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schizosaccharomyces pombe|chr 3|||Manual Length = 524 Score = 25.4 bits (53), Expect = 7.0 Identities = 9/32 (28%), Positives = 20/32 (62%) Frame = +1 Query: 49 NVKYKNHIFLIYRHCSYNKSSSINLVYL*LGK 144 ++ Y+N ++ I + S K S+N++ + +GK Sbjct: 180 HISYQNGLYCIDKDKSLTKEPSVNIILMNVGK 211 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,694,145 Number of Sequences: 5004 Number of extensions: 55377 Number of successful extensions: 150 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 150 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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