Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0962
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836...    32   0.45 
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808...    28   5.5  
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317...    28   7.2  
02_05_1116 - 34229234-34229440,34229534-34229593,34229663-342300...    27   9.6  

>05_07_0128 +
           27879969-27880143,27880232-27881323,27883562-27883698,
           27884179-27884409,27884707-27884730
          Length = 552

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   PPPNSAAADPEIRDSET*NIKTTSF*FIGTVHI 100
           PPP SA      RD ET   KTTS+ F  T+H+
Sbjct: 473 PPPPSATVVAVSRDDETMCTKTTSYSFPATMHL 505


>03_02_0394 -
           8081172-8081330,8082015-8082134,8082223-8082271,
           8083193-8083371,8083583-8083852,8084480-8084631,
           8085694-8085715,8086314-8086430
          Length = 355

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -1

Query: 491 KHSISPKNIDKVCKNGWLKYLSSPSDPFDFNISAHFVLKELIEP 360
           KH ++      + K+ W    S+PS P      +H V   L+ P
Sbjct: 39  KHEVAKAEASSLKKSRWYMIKSNPSSPLTTQRESHKVSTHLVRP 82


>01_04_0102 +
           16030094-16030462,16030595-16030714,16031715-16031792,
           16032760-16032933,16033844-16033921,16034338-16034510,
           16034757-16034912,16036460-16036621,16036815-16036826,
           16036947-16036962,16037663-16037875
          Length = 516

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 424 EERYFNHPFLQTLSMFLG 477
           E RYF HP+ Q+LS F G
Sbjct: 349 EARYFKHPYDQSLSTFRG 366


>02_05_1116 -
           34229234-34229440,34229534-34229593,34229663-34230073,
           34230357-34230687,34230781-34230867,34230952-34231331,
           34231531-34232105,34233035-34233272
          Length = 762

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +1

Query: 334 FLALMMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLGI 513
           F  ++ L  GS+   STK      SK  + +   FN  F  T+S  LG +  ++   LG+
Sbjct: 99  FAVVIFLFLGSVEGFSTKTHPCTYSKDKECKPALFNALF-STVSFLLGAITSVVSGFLGM 157

Query: 514 TKHGTLGDIH*QLEHKTSI 570
            K  T  +    LE +  +
Sbjct: 158 -KIATYANARTTLEARKGV 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,031
Number of Sequences: 37544
Number of extensions: 311442
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)