Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0962
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47443| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              29   4.2  
SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)                      28   5.6  
SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)                    28   7.4  
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)                    28   7.4  
SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)                 28   7.4  

>SB_47443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +2

Query: 467 CFWVKCYVYLCSNWVLQNTEHWGTFINSWNTKLQSLNSDARSYVGFGLEHP 619
           CF ++ ++++    V+Q+ + W     +    L+  N ++  Y+GF L  P
Sbjct: 2   CFAIRKHIFV----VVQSFKEWALCFEAKEMYLEDQNKESPQYIGFSLRKP 48


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 434 ISTIHSCRPYLCFWVKC-YVYLCSNWVLQNTEH 529
           I+T+ +  PY+C+W++    +LC +W   + +H
Sbjct: 68  INTVLNKDPYVCYWIRTGCCHLCWHWRPLHVDH 100


>SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)
          Length = 476

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 291 PIINVSSSFKFTEFYNHMSNYRIFYSIVLI*NISHNVCRTQSKIIVNI 148
           P++   S F + EF     NY+  + + L+  +S  + +T SK + NI
Sbjct: 100 PVVASDSLFIWCEFRGFAMNYKALFVVFLVIGVS-EIPQTNSKAVNNI 146


>SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 560

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 509 VLQNTEHWGTFINSWNTKLQSL 574
           VL +  HW   I  WNT LQ+L
Sbjct: 289 VLSSLTHWEEVIAEWNTTLQTL 310


>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 688

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 509 VLQNTEHWGTFINSWNTKLQSL 574
           VL +  HW   I  WNT LQ+L
Sbjct: 333 VLSSLTHWEEVIAEWNTTLQTL 354


>SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)
          Length = 559

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 443 WLKYLSSPSDPFDFNISAHFVLKELIEPVTNIIR 342
           WL Y+SS + P+ + +    + KEL++ +  ++R
Sbjct: 446 WLMYMSSLTTPYVYTLLNRRLRKELVQAIKAMVR 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,913
Number of Sequences: 59808
Number of extensions: 363332
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)