Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0962
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.47 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.47 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 503 NWVLQNTEHWGTFINSWNTKLQ 568
           ++V+  TE W +FIN W  KL+
Sbjct: 383 DYVVLETE-WSSFINPWTKKLE 403


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 503 NWVLQNTEHWGTFINSWNTKLQ 568
           ++V+  TE W +FIN W  KL+
Sbjct: 89  DYVVLETE-WSSFINPWTKKLE 109


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 482 ISPKNIDKVCKNGWL 438
           +SP   D +C NGW+
Sbjct: 365 LSPSIHDNICSNGWI 379


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 530 WGTFINSWNTK 562
           WG+  N WNTK
Sbjct: 98  WGSCNNYWNTK 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,430
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)