BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0962 (641 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 0.47 AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 25 0.47 AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 24 1.1 AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 5.8 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 25.4 bits (53), Expect = 0.47 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 503 NWVLQNTEHWGTFINSWNTKLQ 568 ++V+ TE W +FIN W KL+ Sbjct: 383 DYVVLETE-WSSFINPWTKKLE 403 >AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. Length = 238 Score = 25.4 bits (53), Expect = 0.47 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 503 NWVLQNTEHWGTFINSWNTKLQ 568 ++V+ TE W +FIN W KL+ Sbjct: 89 DYVVLETE-WSSFINPWTKKLE 109 >AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. Length = 493 Score = 24.2 bits (50), Expect = 1.1 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -1 Query: 482 ISPKNIDKVCKNGWL 438 +SP D +C NGW+ Sbjct: 365 LSPSIHDNICSNGWI 379 >AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter transporter-1A protein. Length = 203 Score = 21.8 bits (44), Expect = 5.8 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = +2 Query: 530 WGTFINSWNTK 562 WG+ N WNTK Sbjct: 98 WGSCNNYWNTK 108 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 181,430 Number of Sequences: 438 Number of extensions: 3822 Number of successful extensions: 8 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 19315974 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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