Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0962
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35604.1 68418.m04242 hypothetical protein                          28   4.6  
At5g46110.2 68418.m05670 phosphate/triose-phosphate translocator...    27   8.0  
At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator...    27   8.0  

>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 530 WGTFINSWNTKLQSLNSDARSY 595
           W   INSW  K  SL +D RS+
Sbjct: 216 WEQEINSWRNKFSSLEADHRSF 237


>At5g46110.2 68418.m05670 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 297

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 433 YFNHP-FLQTLSMFLGEMLCLLVFKLGITKHGTL 531
           YF +P F+  + +F+G + CL+ + +G+ K   +
Sbjct: 19  YFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPI 52


>At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 410

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 433 YFNHP-FLQTLSMFLGEMLCLLVFKLGITKHGTL 531
           YF +P F+  + +F+G + CL+ + +G+ K   +
Sbjct: 132 YFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPI 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,657,744
Number of Sequences: 28952
Number of extensions: 268871
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)