Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0961
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   134   7e-33
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    29   0.37 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.0  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    27   2.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   6.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   7.9  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  134 bits (325), Expect = 7e-33
 Identities = 63/90 (70%), Positives = 78/90 (86%), Gaps = 5/90 (5%)
 Frame = +2

Query: 2   GRGRGK-----EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLN 166
           GRGRG+     +++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LN
Sbjct: 18  GRGRGRRGAKRDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLN 76

Query: 167 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDT 256
           DEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 77  DEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106



 Score =  134 bits (324), Expect = 9e-33
 Identities = 63/104 (60%), Positives = 76/104 (73%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTV
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTV 166

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           RL+PA     L    V K+ LQ+A    CYT  S      LGNF
Sbjct: 167 RLVPAPRGAGLVAAPVTKRFLQLAGIEDCYT-QSRGSTKTLGNF 209


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 442 IPALVVLELCLRQVPKKLLQMAVYRTC--YTFNSLV 543
           +P L++L LC+ ++  KL   A++ TC  Y F++L+
Sbjct: 158 LPTLILLNLCILKLAAKLHLSALFTTCLIYFFSALL 193


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 459  YHEGRNQXDCYRTTLAGDLARDGVWLS--DLVTPVTSS 352
            +HEG+N    Y+  + G LA +GV  +  D++T + SS
Sbjct: 1717 FHEGQNSSTGYKDIVQGLLAENGVSEAGVDVMTSIVSS 1754


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 244 HWRHNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRR-GYW 366
           HWRHN   G+  +   E+ T + G    +K  VL V R G+W
Sbjct: 91  HWRHNNTFGIADQWRNELYT-VYGK---SKKPVLAVERGGFW 128


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 20  EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 142
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 387 WLSDLVTPVTSSNW*NRQLSKDNSASN 307
           ++S++VTP T++NW N   S  +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 126 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 236
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,496
Number of Sequences: 5004
Number of extensions: 57627
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)