SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0961
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      149   1e-36
07_01_0756 + 5819367-5820038,5820847-5821005                          148   3e-36
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     62   4e-10
06_03_0637 - 22995831-22996667,22997200-22997694                       31   0.86 
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613...    30   1.5  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    29   2.0  
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115...    28   4.6  
11_01_0395 + 2999855-2999920,3000605-3002191                           28   6.1  
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983...    28   6.1  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    27   8.0  
04_03_0137 + 11703765-11703980,11704719-11705471                       27   8.0  
02_02_0342 + 9159661-9160299                                           27   8.0  
01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293     27   8.0  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  149 bits (362), Expect = 1e-36
 Identities = 72/105 (68%), Positives = 84/105 (80%)
 Frame = +1

Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
           +NGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVT
Sbjct: 116 NNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVT 175

Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           VR++PA     +   +VPKK+LQ A     +T +S      LGNF
Sbjct: 176 VRMVPAPRGSGIVAARVPKKVLQFAGIEDVFT-SSRGSTKTLGNF 219



 Score =  118 bits (283), Expect = 4e-27
 Identities = 54/84 (64%), Positives = 69/84 (82%)
 Frame = +2

Query: 2   GRGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLK 181
           GR   ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  L P L DEV+K
Sbjct: 33  GRRGPRQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE-TLVPGLKDEVMK 91

Query: 182 IMPVQKQTRAGQRTRFKAFVAIGD 253
           I PVQKQTRAGQRTRFKAFV +GD
Sbjct: 92  ITPVQKQTRAGQRTRFKAFVVVGD 115


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  148 bits (359), Expect = 3e-36
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 179

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           R++PA     +    VPKK+LQ A     +T +S      LGNF
Sbjct: 180 RMVPAPRGSGIVAAHVPKKVLQFAGIEDVFT-SSRGSTKTLGNF 222



 Score =  117 bits (282), Expect = 6e-27
 Identities = 55/84 (65%), Positives = 69/84 (82%)
 Frame = +2

Query: 2   GRGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLK 181
           GR   ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  L P L DEV+K
Sbjct: 36  GRRGPRQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE-QLVPGLKDEVMK 94

Query: 182 IMPVQKQTRAGQRTRFKAFVAIGD 253
           I PVQKQTRAGQRTRFKAFV +GD
Sbjct: 95  ITPVQKQTRAGQRTRFKAFVVVGD 118


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVTGKCGSVT 432
           + HI LGVKC+K  AT + GAIILA   +     G     I  KPHTV CKV  K GSVT
Sbjct: 9   DSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVADKYGSVT 63

Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           VR++   +   +   +VPKK+L+ A     +T +S      L NF
Sbjct: 64  VRMMLPPMGSSVVATRVPKKVLKFAGIEDVFT-SSRGSTKTLSNF 107


>06_03_0637 - 22995831-22996667,22997200-22997694
          Length = 443

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 298 ATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPALV-VLELCL 474
           A A++     +   VL +  GYWGN I      P KV+   G V    +  LV V+    
Sbjct: 288 AAAVKLCFFASARQVLGLETGYWGNAI-----FPVKVSAAAGEVAASSVIELVGVVREAK 342

Query: 475 RQVPKKLLQMAVYRT 519
           R++  + L+ A  RT
Sbjct: 343 RRMAGECLRWAEGRT 357


>07_03_0681 +
           20659789-20659839,20660030-20660170,20661294-20661399,
           20661625-20661806,20661888-20662113,20662198-20662624,
           20662844-20663189,20663271-20663849
          Length = 685

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 408 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 259
           DL  D   ++ +   +  + W NR +++    + G G    ALH  TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403


>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 14  GKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 154
           G +  KE +P    G  V  G+    +++ + SLPIK++ +  FF G
Sbjct: 803 GADGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849


>07_01_0163 +
           1149466-1150593,1150733-1150937,1151453-1151485,
           1152244-1153646
          Length = 922

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 390 HRPLQGHRQVWFCNSPXDSCPRG--TGIVSAPSS*KASSDGCVQDLLHLQLVGSTGTLG 560
           ++ +QG++Q WF   P +S  RG    +  A +   A  D    D++ LQL  ST  +G
Sbjct: 174 YKSIQGNKQHWFWVRPNNSAERGIEAKLFFAFNDGSAPEDNFYIDII-LQLSESTNIVG 231


>11_01_0395 + 2999855-2999920,3000605-3002191
          Length = 550

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 104 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 223
           +F   +++ ++IDF L   L D  + I+P+    R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276


>06_03_0956 +
           26296744-26297382,26297595-26297669,26298147-26298341,
           26298426-26298559,26298713-26298779,26298985-26299043,
           26299204-26299321,26299613-26299726,26299855-26299986,
           26300076-26300492,26300904-26300954,26301303-26301373,
           26302067-26302151,26302258-26302410,26302522-26302596,
           26302755-26302844,26303953-26304000,26304081-26304195,
           26305356-26305459,26305582-26305692
          Length = 950

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 543 NQRVEGVASPVHSHLKKLFRNLAQTQFQYHEGR 445
           N    G A P+H+HL  L  +L +   +Y EGR
Sbjct: 527 NLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGR 559


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 399 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 259
           R  VW++D  TPVT+S+     LS  NS++    D    +   TN+T
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNIT 151


>04_03_0137 + 11703765-11703980,11704719-11705471
          Length = 322

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +1

Query: 172 GSKDHACTETNTCR-TAHTFQGICCHWRHN----GHIGLGVKCSKEVATAIRGAIILAKL 336
           G+ D  C    T   TAH  Q      +H     GH+GLG+        + RGA +  KL
Sbjct: 43  GAADGVCFPCGTSTATAHLLQPKHSQPQHEVLREGHVGLGIWPCSATGHSSRGAPVKVKL 102

Query: 337 S 339
           S
Sbjct: 103 S 103


>02_02_0342 + 9159661-9160299
          Length = 212

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 449 PSWYWNCVCAKFLKSF-FRWLCTG 517
           PSW  + +C K+LKSF    +C G
Sbjct: 101 PSWLCSYICVKYLKSFHLEGVCWG 124


>01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293
          Length = 575

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 555 GCQLNQRVEGVASPVHSHLKK 493
           G + NQR EG+ S +HSHL +
Sbjct: 293 GMRSNQRSEGLNSRIHSHLDR 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,090
Number of Sequences: 37544
Number of extensions: 414107
Number of successful extensions: 1112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -