Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0961
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 149 1e-36
07_01_0756 + 5819367-5820038,5820847-5821005 148 3e-36
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 62 4e-10
06_03_0637 - 22995831-22996667,22997200-22997694 31 0.86
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 1.5
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 29 2.0
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 28 4.6
11_01_0395 + 2999855-2999920,3000605-3002191 28 6.1
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983... 28 6.1
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 27 8.0
04_03_0137 + 11703765-11703980,11704719-11705471 27 8.0
02_02_0342 + 9159661-9160299 27 8.0
01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293 27 8.0
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 149 bits (362), Expect = 1e-36
Identities = 72/105 (68%), Positives = 84/105 (80%)
Frame = +1
Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
+NGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVT
Sbjct: 116 NNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVT 175
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VR++PA + +VPKK+LQ A +T +S LGNF
Sbjct: 176 VRMVPAPRGSGIVAARVPKKVLQFAGIEDVFT-SSRGSTKTLGNF 219
Score = 118 bits (283), Expect = 4e-27
Identities = 54/84 (64%), Positives = 69/84 (82%)
Frame = +2
Query: 2 GRGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLK 181
GR ++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ L P L DEV+K
Sbjct: 33 GRRGPRQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE-TLVPGLKDEVMK 91
Query: 182 IMPVQKQTRAGQRTRFKAFVAIGD 253
I PVQKQTRAGQRTRFKAFV +GD
Sbjct: 92 ITPVQKQTRAGQRTRFKAFVVVGD 115
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 148 bits (359), Expect = 3e-36
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
+GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 179
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
R++PA + VPKK+LQ A +T +S LGNF
Sbjct: 180 RMVPAPRGSGIVAAHVPKKVLQFAGIEDVFT-SSRGSTKTLGNF 222
Score = 117 bits (282), Expect = 6e-27
Identities = 55/84 (65%), Positives = 69/84 (82%)
Frame = +2
Query: 2 GRGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLK 181
GR ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ L P L DEV+K
Sbjct: 36 GRRGPRQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE-QLVPGLKDEVMK 94
Query: 182 IMPVQKQTRAGQRTRFKAFVAIGD 253
I PVQKQTRAGQRTRFKAFV +GD
Sbjct: 95 ITPVQKQTRAGQRTRFKAFVVVGD 118
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 61.7 bits (143), Expect = 4e-10
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVTGKCGSVT 432
+ HI LGVKC+K AT + GAIILA + G I KPHTV CKV K GSVT
Sbjct: 9 DSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVADKYGSVT 63
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VR++ + + +VPKK+L+ A +T +S L NF
Sbjct: 64 VRMMLPPMGSSVVATRVPKKVLKFAGIEDVFT-SSRGSTKTLSNF 107
>06_03_0637 - 22995831-22996667,22997200-22997694
Length = 443
Score = 30.7 bits (66), Expect = 0.86
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 298 ATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPALV-VLELCL 474
A A++ + VL + GYWGN I P KV+ G V + LV V+
Sbjct: 288 AAAVKLCFFASARQVLGLETGYWGNAI-----FPVKVSAAAGEVAASSVIELVGVVREAK 342
Query: 475 RQVPKKLLQMAVYRT 519
R++ + L+ A RT
Sbjct: 343 RRMAGECLRWAEGRT 357
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 408 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 259
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 14 GKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 154
G + KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 803 GADGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 390 HRPLQGHRQVWFCNSPXDSCPRG--TGIVSAPSS*KASSDGCVQDLLHLQLVGSTGTLG 560
++ +QG++Q WF P +S RG + A + A D D++ LQL ST +G
Sbjct: 174 YKSIQGNKQHWFWVRPNNSAERGIEAKLFFAFNDGSAPEDNFYIDII-LQLSESTNIVG 231
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 104 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 223
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>06_03_0956 +
26296744-26297382,26297595-26297669,26298147-26298341,
26298426-26298559,26298713-26298779,26298985-26299043,
26299204-26299321,26299613-26299726,26299855-26299986,
26300076-26300492,26300904-26300954,26301303-26301373,
26302067-26302151,26302258-26302410,26302522-26302596,
26302755-26302844,26303953-26304000,26304081-26304195,
26305356-26305459,26305582-26305692
Length = 950
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 543 NQRVEGVASPVHSHLKKLFRNLAQTQFQYHEGR 445
N G A P+H+HL L +L + +Y EGR
Sbjct: 527 NLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGR 559
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 399 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 259
R VW++D TPVT+S+ LS NS++ D + TN+T
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNIT 151
>04_03_0137 + 11703765-11703980,11704719-11705471
Length = 322
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +1
Query: 172 GSKDHACTETNTCR-TAHTFQGICCHWRHN----GHIGLGVKCSKEVATAIRGAIILAKL 336
G+ D C T TAH Q +H GH+GLG+ + RGA + KL
Sbjct: 43 GAADGVCFPCGTSTATAHLLQPKHSQPQHEVLREGHVGLGIWPCSATGHSSRGAPVKVKL 102
Query: 337 S 339
S
Sbjct: 103 S 103
>02_02_0342 + 9159661-9160299
Length = 212
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 449 PSWYWNCVCAKFLKSF-FRWLCTG 517
PSW + +C K+LKSF +C G
Sbjct: 101 PSWLCSYICVKYLKSFHLEGVCWG 124
>01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293
Length = 575
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 555 GCQLNQRVEGVASPVHSHLKK 493
G + NQR EG+ S +HSHL +
Sbjct: 293 GMRSNQRSEGLNSRIHSHLDR 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,090
Number of Sequences: 37544
Number of extensions: 414107
Number of successful extensions: 1112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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