Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0961
(572 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 6e-40
SB_59306| Best HMM Match : CUT (HMM E-Value=2) 30 1.5
SB_41137| Best HMM Match : Mss4 (HMM E-Value=3.7) 30 1.5
SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08) 30 1.5
SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12) 30 1.5
SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08) 30 1.5
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41) 30 1.5
SB_38780| Best HMM Match : Astacin (HMM E-Value=0) 29 2.0
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 28 6.2
SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 6.2
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) 28 6.2
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 27 8.2
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 160 bits (389), Expect = 6e-40
Identities = 79/104 (75%), Positives = 84/104 (80%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGS V
Sbjct: 82 NGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRV 141
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
RLIPA + VPKKLLQMA CYT ++ Q A LGNF
Sbjct: 142 RLIPAPRGTGIVSAPVPKKLLQMAGIEDCYT-STRGQTATLGNF 184
Score = 132 bits (320), Expect = 1e-31
Identities = 64/74 (86%), Positives = 68/74 (91%)
Frame = +2
Query: 35 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 214
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67
Query: 215 QRTRFKAFVAIGDT 256
QRTRFKAFVAIGD+
Sbjct: 68 QRTRFKAFVAIGDS 81
>SB_59306| Best HMM Match : CUT (HMM E-Value=2)
Length = 309
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 67 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 96
>SB_41137| Best HMM Match : Mss4 (HMM E-Value=3.7)
Length = 234
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 67 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 96
>SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08)
Length = 554
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 157 PICXGHFG-VDRCNENGQRLLELCSLHHLCI 186
>SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12)
Length = 548
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 261 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 290
>SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08)
Length = 545
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 157 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 186
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 1727 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 1756
>SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41)
Length = 889
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 203 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 232
>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
Length = 1153
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
P C H DRC NG + LE C+L C+
Sbjct: 274 PICLGHFG-VDRCNENGQRLLELCSLYHLCI 303
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 286 SKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKCGS 426
+K + G++ L+ P +RRG G++ KPH+ P ++ + GS
Sbjct: 150 NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARFGS 197
>SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 546
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 175 SKDHACTETNTCRTAHTFQGICCHWRHNGHIG--LGVKCS 288
+KD C T +C FQG C G+ G L +KC+
Sbjct: 55 TKDEICDNTGSCVCKDNFQGHRCQKCMTGYYGFPLCIKCA 94
>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 282 LHTQTNMTVVSPMATNALKRVRCPARVCFCTGMIF 178
L+T +TV+ TNAL +RC C+C M+F
Sbjct: 124 LYTAFTLTVLLSNLTNALYDLRCK---CYCAEMMF 155
>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
Length = 174
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 30 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 140
KSG L ++F E +S+AF C LY +KN SL
Sbjct: 56 KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91
>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
Length = 141
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 248 GDTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTPSLARS 409
GD V L+ S KS L + + +C Y+F +TG+TR S A+S
Sbjct: 62 GDARVALIGFPSVG-KSTLLTKLTQTQSACASYEFTTLTGITRDASQGEIHAKS 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,957,653
Number of Sequences: 59808
Number of extensions: 487330
Number of successful extensions: 1551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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