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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0961
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              160   6e-40
SB_59306| Best HMM Match : CUT (HMM E-Value=2)                         30   1.5  
SB_41137| Best HMM Match : Mss4 (HMM E-Value=3.7)                      30   1.5  
SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08)         30   1.5  
SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12)          30   1.5  
SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08)         30   1.5  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41)             30   1.5  
SB_38780| Best HMM Match : Astacin (HMM E-Value=0)                     29   2.0  
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)                   28   6.2  
SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   6.2  
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       28   6.2  
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)              27   8.2  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  160 bits (389), Expect = 6e-40
 Identities = 79/104 (75%), Positives = 84/104 (80%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGS  V
Sbjct: 82  NGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRV 141

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           RLIPA     +    VPKKLLQMA    CYT ++  Q A LGNF
Sbjct: 142 RLIPAPRGTGIVSAPVPKKLLQMAGIEDCYT-STRGQTATLGNF 184



 Score =  132 bits (320), Expect = 1e-31
 Identities = 64/74 (86%), Positives = 68/74 (91%)
 Frame = +2

Query: 35  WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 214
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 215 QRTRFKAFVAIGDT 256
           QRTRFKAFVAIGD+
Sbjct: 68  QRTRFKAFVAIGDS 81


>SB_59306| Best HMM Match : CUT (HMM E-Value=2)
          Length = 309

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
           P C  H    DRC  NG + LE C+L   C+
Sbjct: 67  PICLGHFG-VDRCNENGQRLLELCSLHHLCI 96


>SB_41137| Best HMM Match : Mss4 (HMM E-Value=3.7)
          Length = 234

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
           P C  H    DRC  NG + LE C+L   C+
Sbjct: 67  PICLGHFG-VDRCNENGQRLLELCSLHHLCI 96


>SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08)
          Length = 554

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
           P C  H    DRC  NG + LE C+L   C+
Sbjct: 157 PICXGHFG-VDRCNENGQRLLELCSLHHLCI 186


>SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12)
          Length = 548

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
           P C  H    DRC  NG + LE C+L   C+
Sbjct: 261 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 290


>SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08)
          Length = 545

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
           P C  H    DRC  NG + LE C+L   C+
Sbjct: 157 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 186


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292  PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
            P C  H    DRC  NG + LE C+L   C+
Sbjct: 1727 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 1756


>SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41)
          Length = 889

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
           P C  H    DRC  NG + LE C+L   C+
Sbjct: 203 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 232


>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 1153

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200
           P C  H    DRC  NG + LE C+L   C+
Sbjct: 274 PICLGHFG-VDRCNENGQRLLELCSLYHLCI 303


>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
          Length = 733

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 286 SKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKCGS 426
           +K   +   G++    L+  P +RRG  G++  KPH+ P  ++ + GS
Sbjct: 150 NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARFGS 197


>SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 546

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 175 SKDHACTETNTCRTAHTFQGICCHWRHNGHIG--LGVKCS 288
           +KD  C  T +C     FQG  C     G+ G  L +KC+
Sbjct: 55  TKDEICDNTGSCVCKDNFQGHRCQKCMTGYYGFPLCIKCA 94


>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 282 LHTQTNMTVVSPMATNALKRVRCPARVCFCTGMIF 178
           L+T   +TV+    TNAL  +RC    C+C  M+F
Sbjct: 124 LYTAFTLTVLLSNLTNALYDLRCK---CYCAEMMF 155


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 30  KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 140
           KSG L     ++F  E   +S+AF C LY +KN  SL
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 248 GDTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTPSLARS 409
           GD  V L+   S   KS L  +   +  +C  Y+F  +TG+TR  S     A+S
Sbjct: 62  GDARVALIGFPSVG-KSTLLTKLTQTQSACASYEFTTLTGITRDASQGEIHAKS 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,957,653
Number of Sequences: 59808
Number of extensions: 487330
Number of successful extensions: 1551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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