BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0961 (572 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 6e-40 SB_59306| Best HMM Match : CUT (HMM E-Value=2) 30 1.5 SB_41137| Best HMM Match : Mss4 (HMM E-Value=3.7) 30 1.5 SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08) 30 1.5 SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12) 30 1.5 SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08) 30 1.5 SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41) 30 1.5 SB_38780| Best HMM Match : Astacin (HMM E-Value=0) 29 2.0 SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 28 6.2 SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 6.2 SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) 28 6.2 SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 27 8.2 >SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 252 Score = 160 bits (389), Expect = 6e-40 Identities = 79/104 (75%), Positives = 84/104 (80%) Frame = +1 Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435 NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGS V Sbjct: 82 NGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRV 141 Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567 RLIPA + VPKKLLQMA CYT ++ Q A LGNF Sbjct: 142 RLIPAPRGTGIVSAPVPKKLLQMAGIEDCYT-STRGQTATLGNF 184 Score = 132 bits (320), Expect = 1e-31 Identities = 64/74 (86%), Positives = 68/74 (91%) Frame = +2 Query: 35 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 214 WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67 Query: 215 QRTRFKAFVAIGDT 256 QRTRFKAFVAIGD+ Sbjct: 68 QRTRFKAFVAIGDS 81 >SB_59306| Best HMM Match : CUT (HMM E-Value=2) Length = 309 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 67 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 96 >SB_41137| Best HMM Match : Mss4 (HMM E-Value=3.7) Length = 234 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 67 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 96 >SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08) Length = 554 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 157 PICXGHFG-VDRCNENGQRLLELCSLHHLCI 186 >SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12) Length = 548 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 261 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 290 >SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08) Length = 545 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 157 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 186 >SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2973 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 1727 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 1756 >SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41) Length = 889 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 203 PICLGHFG-VDRCNENGQRLLELCSLHHLCI 232 >SB_38780| Best HMM Match : Astacin (HMM E-Value=0) Length = 1153 Score = 29.5 bits (63), Expect = 2.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 292 PCCTSHPNQYDRCVANGNKCLETCALSGTCL 200 P C H DRC NG + LE C+L C+ Sbjct: 274 PICLGHFG-VDRCNENGQRLLELCSLYHLCI 303 >SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) Length = 733 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 286 SKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKCGS 426 +K + G++ L+ P +RRG G++ KPH+ P ++ + GS Sbjct: 150 NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARFGS 197 >SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0) Length = 546 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = +1 Query: 175 SKDHACTETNTCRTAHTFQGICCHWRHNGHIG--LGVKCS 288 +KD C T +C FQG C G+ G L +KC+ Sbjct: 55 TKDEICDNTGSCVCKDNFQGHRCQKCMTGYYGFPLCIKCA 94 >SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 217 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 282 LHTQTNMTVVSPMATNALKRVRCPARVCFCTGMIF 178 L+T +TV+ TNAL +RC C+C M+F Sbjct: 124 LYTAFTLTVLLSNLTNALYDLRCK---CYCAEMMF 155 >SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) Length = 174 Score = 27.9 bits (59), Expect = 6.2 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +3 Query: 30 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 140 KSG L ++F E +S+AF C LY +KN SL Sbjct: 56 KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91 >SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) Length = 141 Score = 27.5 bits (58), Expect = 8.2 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +2 Query: 248 GDTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTPSLARS 409 GD V L+ S KS L + + +C Y+F +TG+TR S A+S Sbjct: 62 GDARVALIGFPSVG-KSTLLTKLTQTQSACASYEFTTLTGITRDASQGEIHAKS 114 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,957,653 Number of Sequences: 59808 Number of extensions: 487330 Number of successful extensions: 1551 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1418 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1550 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1361520496 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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