Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0961
(572 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 159 3e-39
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 159 3e-39
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 159 3e-39
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 159 3e-39
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 159 3e-39
AY071302-1|AAL48924.1| 302|Drosophila melanogaster RE33041p pro... 31 0.84
AE014134-486|AAF51198.2| 302|Drosophila melanogaster CG2973-PA ... 31 0.84
AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p pro... 29 5.9
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr... 29 5.9
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot... 29 5.9
AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog... 29 5.9
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB... 29 5.9
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA... 29 5.9
AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA... 29 5.9
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 159 bits (385), Expect = 3e-39
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = +2
Query: 5 RGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKI 184
RGRGKED KEWVPVTKLGRLVREGKI LE IYL+SLPIKEFEIIDFFLG SL DEVLKI
Sbjct: 33 RGRGKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI 92
Query: 185 MPVQKQTRAGQRTRFKAFVAIGD 253
MPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 93 MPVQKQTRAGQRTRFKAFVAIGD 115
Score = 156 bits (378), Expect = 2e-38
Identities = 77/105 (73%), Positives = 84/105 (80%)
Frame = +1
Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
+NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 116 NNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVS 175
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VRLIPA + VP+KLL MA CYT ++ LGNF
Sbjct: 176 VRLIPAPRGTGIVSAPVPRKLLTMAGIEDCYT-SARGSTGTLGNF 219
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 159 bits (385), Expect = 3e-39
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = +2
Query: 5 RGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKI 184
RGRGKED KEWVPVTKLGRLVREGKI LE IYL+SLPIKEFEIIDFFLG SL DEVLKI
Sbjct: 33 RGRGKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI 92
Query: 185 MPVQKQTRAGQRTRFKAFVAIGD 253
MPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 93 MPVQKQTRAGQRTRFKAFVAIGD 115
Score = 157 bits (381), Expect = 1e-38
Identities = 78/105 (74%), Positives = 84/105 (80%)
Frame = +1
Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
+NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 116 NNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVS 175
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VRLIPA + VPKKLL MA CYT ++ LGNF
Sbjct: 176 VRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYT-SARGSTGTLGNF 219
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 159 bits (385), Expect = 3e-39
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = +2
Query: 5 RGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKI 184
RGRGKED KEWVPVTKLGRLVREGKI LE IYL+SLPIKEFEIIDFFLG SL DEVLKI
Sbjct: 33 RGRGKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI 92
Query: 185 MPVQKQTRAGQRTRFKAFVAIGD 253
MPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 93 MPVQKQTRAGQRTRFKAFVAIGD 115
Score = 157 bits (381), Expect = 1e-38
Identities = 78/105 (74%), Positives = 84/105 (80%)
Frame = +1
Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
+NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 116 NNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVS 175
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VRLIPA + VPKKLL MA CYT ++ LGNF
Sbjct: 176 VRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYT-SARGSTGTLGNF 219
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 159 bits (385), Expect = 3e-39
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = +2
Query: 5 RGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKI 184
RGRGKED KEWVPVTKLGRLVREGKI LE IYL+SLPIKEFEIIDFFLG SL DEVLKI
Sbjct: 33 RGRGKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI 92
Query: 185 MPVQKQTRAGQRTRFKAFVAIGD 253
MPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 93 MPVQKQTRAGQRTRFKAFVAIGD 115
Score = 157 bits (381), Expect = 1e-38
Identities = 78/105 (74%), Positives = 84/105 (80%)
Frame = +1
Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
+NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 116 NNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVS 175
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VRLIPA + VPKKLL MA CYT ++ LGNF
Sbjct: 176 VRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYT-SARGSTGTLGNF 219
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 159 bits (385), Expect = 3e-39
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = +2
Query: 5 RGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKI 184
RGRGKED KEWVPVTKLGRLVREGKI LE IYL+SLPIKEFEIIDFFLG SL DEVLKI
Sbjct: 33 RGRGKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI 92
Query: 185 MPVQKQTRAGQRTRFKAFVAIGD 253
MPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 93 MPVQKQTRAGQRTRFKAFVAIGD 115
Score = 157 bits (381), Expect = 1e-38
Identities = 78/105 (74%), Positives = 84/105 (80%)
Frame = +1
Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
+NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 116 NNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVS 175
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VRLIPA + VPKKLL MA CYT ++ LGNF
Sbjct: 176 VRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYT-SARGSTGTLGNF 219
>AY071302-1|AAL48924.1| 302|Drosophila melanogaster RE33041p
protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.84
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = -3
Query: 384 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVSPMATNALKRVRCPAR 205
L+ L T N+ ++ NSAS+ DFL+ HT +N + S + V PAR
Sbjct: 11 LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSNNALNSEATPDGYDYV-APAR 69
Query: 204 VCFCTGMIFRTSS 166
F G RT+S
Sbjct: 70 NQFTAGS--RTAS 80
>AE014134-486|AAF51198.2| 302|Drosophila melanogaster CG2973-PA
protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.84
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = -3
Query: 384 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVSPMATNALKRVRCPAR 205
L+ L T N+ ++ NSAS+ DFL+ HT +N + S + V PAR
Sbjct: 11 LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSNNALNSEATPDGYDYV-APAR 69
Query: 204 VCFCTGMIFRTSS 166
F G RT+S
Sbjct: 70 NQFTAGS--RTAS 80
>AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p
protein.
Length = 895
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 211 RTAHTFQGICCHWRHNGHIGLGVKCSKEVATAIRGAIILAKL-SVLPVRRGYWGNKIGKP 387
R T G+ H G I C++ V T + +LA L S LPVRR + I K
Sbjct: 137 RHKSTDVGVKVELDHEGRIKKRSPCARGVGTTV----LLANLFSTLPVRRRDFTRNIKKE 192
Query: 388 HTVPCKV 408
T C++
Sbjct: 193 FTKMCQI 199
>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
protein.
Length = 1711
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 290 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 394
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
Length = 1695
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 290 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 394
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog
PMS2 protein.
Length = 893
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 211 RTAH-TFQGICCHWRHNGHIGLGVKCSKEVATAIRGAIILAKL-SVLPVRRGYWGNKIGK 384
+T H + G+ H G I C++ V T + +LA L S LPVRR + I K
Sbjct: 135 QTRHKSTDGVKVELDHEGRIKKRSPCARGVGTTV----LLANLFSTLPVRRRDFTRNIKK 190
Query: 385 PHTVPCKV 408
T C++
Sbjct: 191 EFTKMCQI 198
>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
isoform B protein.
Length = 1695
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 290 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 394
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
isoform A protein.
Length = 1711
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 290 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 394
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA
protein.
Length = 899
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 211 RTAHTFQGICCHWRHNGHIGLGVKCSKEVATAIRGAIILAKL-SVLPVRRGYWGNKIGKP 387
R T G+ H G I C++ V T + +LA L S LPVRR + I K
Sbjct: 137 RHKSTDVGVKVELDHEGRIKKRSPCARGVGTTV----LLANLFSTLPVRRRDFTRNIKKE 192
Query: 388 HTVPCKV 408
T C++
Sbjct: 193 FTKMCQI 199
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,881,738
Number of Sequences: 53049
Number of extensions: 685240
Number of successful extensions: 1679
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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