Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0961
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 147 4e-36
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 30 1.0
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 30 1.0
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 29 1.8
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 29 1.8
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 29 1.8
Z81477-7|CAB03927.2| 326|Caenorhabditis elegans Hypothetical pr... 29 3.1
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 29 3.1
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 3.1
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 29 3.1
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 3.1
AL022288-7|CAA18369.1| 326|Caenorhabditis elegans Hypothetical ... 29 3.1
AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 28 5.4
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 27 7.2
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p... 27 7.2
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 27 7.2
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p... 27 7.2
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 27 7.2
AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical... 27 7.2
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 7.2
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 27 7.2
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 7.2
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 147 bits (357), Expect = 4e-36
Identities = 73/105 (69%), Positives = 79/105 (75%)
Frame = +1
Query: 253 HNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 432
H GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVM 188
Query: 433 VRLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
VRLIPA + VPKKLL MA CYT + A LGNF
Sbjct: 189 VRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYT-AAKGSTATLGNF 232
Score = 121 bits (291), Expect = 4e-28
Identities = 63/82 (76%), Positives = 66/82 (80%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
GRG E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI
Sbjct: 48 GRGGEKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID-ALCSNLKDEVLKIS 106
Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
PVQKQT AGQRTRFKAFVAIGD
Sbjct: 107 PVQKQTTAGQRTRFKAFVAIGD 128
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 360 TSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVSPMATNAL 229
TS+NW N QL NS + GSG + T +SP A AL
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG---VQFDQSLSSTTMSPTARCAL 349
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 225 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 49
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 48 VTGT 37
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 225 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 49
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 48 VTGT 37
+ T
Sbjct: 582 QSNT 585
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 175 SKDHACTETNTCRTAHTFQGICCHWRHNGHIGLGVKCS 288
+++ CT NTCR + + IC R++ I +G++ S
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERS 90
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 175 SKDHACTETNTCRTAHTFQGICCHWRHNGHIGLGVKCS 288
+++ CT NTCR + + IC R++ I +G++ S
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERS 90
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = -1
Query: 464 SSTTRAGIXRTVTEPHLPVTLQGTVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLL 285
++ T I TVT H+P T+ T P +P L T T R T+L
Sbjct: 102 TTVTTTPIPTTVTSTHIPTTV--TTTSIPTTVPSTQLPTTVTTTPIPTTTTRKTTTTTLR 159
Query: 284 HFTPKPI 264
P+P+
Sbjct: 160 PTKPRPM 166
>Z81477-7|CAB03927.2| 326|Caenorhabditis elegans Hypothetical
protein C27C7.4 protein.
Length = 326
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 184 HACTETNTCRTAHTFQGICCHWRHNGHIGLGVKCSKEVATAIRGA 318
+ CT TN+C +H + C R+ I G+ S+ R A
Sbjct: 48 YMCTATNSCTISHDMKFFCRACRYTSCIRAGMVMSRNALATARKA 92
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform d protein.
Length = 1379
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 483 NLAQTQFQYHEGRNQXDCYRTTLAGDLARDGVWLSDLVT--PVTSSNW 346
N +T+ +Y E R RTT+ G L + + +DL+T SS W
Sbjct: 598 NRRETEIEYEEKRQGPPVVRTTVEGKLKMEKIVGADLITVDSCISSAW 645
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 483 NLAQTQFQYHEGRNQXDCYRTTLAGDLARDGVWLSDLVT--PVTSSNW 346
N +T+ +Y E R RTT+ G L + + +DL+T SS W
Sbjct: 598 NRRETEIEYEEKRQGPPVVRTTVEGKLKMEKIVGADLITVDSCISSAW 645
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform a protein.
Length = 1633
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 483 NLAQTQFQYHEGRNQXDCYRTTLAGDLARDGVWLSDLVT--PVTSSNW 346
N +T+ +Y E R RTT+ G L + + +DL+T SS W
Sbjct: 598 NRRETEIEYEEKRQGPPVVRTTVEGKLKMEKIVGADLITVDSCISSAW 645
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 483 NLAQTQFQYHEGRNQXDCYRTTLAGDLARDGVWLSDLVT--PVTSSNW 346
N +T+ +Y E R RTT+ G L + + +DL+T SS W
Sbjct: 598 NRRETEIEYEEKRQGPPVVRTTVEGKLKMEKIVGADLITVDSCISSAW 645
>AL022288-7|CAA18369.1| 326|Caenorhabditis elegans Hypothetical
protein ZK1025.10 protein.
Length = 326
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 184 HACTETNTCRTAHTFQGICCHWRHNGHIGLGVKCSKEVATAIRGA 318
+ CT TN+C +H + C R+ I G+ S+ R A
Sbjct: 48 YMCTATNSCTISHDMKFFCRACRYTSCIRAGMVMSRNALATARKA 92
>AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical
protein ZK250.6 protein.
Length = 843
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 247 WRHNGHIGLGVKCSKE 294
WRHNG++ L ++C KE
Sbjct: 604 WRHNGYLVLYLQCDKE 619
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +2
Query: 71 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 250
E + ++LE S+P+ + +F+ GP+ + P Q Q A Q T F A+
Sbjct: 177 EKRCEQLEMEKKNSVPVFQPFNSNFYFGPATAST---LQPFQLQPPALQFTHSFNFTALP 233
Query: 251 DTTVILVWV*SAARKSPLPFEAL 319
T+ SAA +P PF +
Sbjct: 234 STSAPFPPAPSAAAPAPSPFSQM 256
>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = -2
Query: 316 RLEWQWRLPCCTSHPNQYDRCVANG--NKCLETCA 218
R EW PC N D C+ G + CLE C+
Sbjct: 200 RAEWPKVSPCIADGRNHTDCCLKKGVQHDCLEICS 234
>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
protein T04A11.3 protein.
Length = 1014
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = -2
Query: 316 RLEWQWRLPCCTSHPNQYDRCVANG--NKCLETCA 218
R EW PC N D C+ G + CLE C+
Sbjct: 21 RAEWPKVSPCIADGRNHTDCCLKKGVQHDCLEICS 55
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +2
Query: 71 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 250
E + ++LE S+P+ + +F+ GP+ + P Q Q A Q T F A+
Sbjct: 177 EKRCEQLEMEKKNSVPVFQPFNSNFYFGPATAST---LQPFQLQPPALQFTHSFNFTALP 233
Query: 251 DTTVILVWV*SAARKSPLPFEAL 319
T+ SAA +P PF +
Sbjct: 234 STSAPFPPAPSAAAPAPSPFSQM 256
>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = -2
Query: 316 RLEWQWRLPCCTSHPNQYDRCVANG--NKCLETCA 218
R EW PC N D C+ G + CLE C+
Sbjct: 200 RAEWPKVSPCIADGRNHTDCCLKKGVQHDCLEICS 234
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 267 NMTVVSPMATNALKRVRCPARV 202
NMT+ +PM T L+RV P R+
Sbjct: 1288 NMTIETPMETTVLERVELPFRL 1309
>AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical
protein Y43F8C.13 protein.
Length = 338
Score = 27.5 bits (58), Expect = 7.2
Identities = 31/135 (22%), Positives = 54/135 (40%)
Frame = -3
Query: 411 GDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVSPMATNA 232
GD + L + P+T W ++ + S DF A L T + +AT+
Sbjct: 181 GDPEAASIVLRRMKCPITIVPW--EAFYFESKTHDASVDFSAHLKYGTPLANYLSLATS- 237
Query: 231 LKRVRCPARVCFCTGMIFRTSSFRDGPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPS 52
+ RV+C A R S+ D + I I K+++ + + + ++TR
Sbjct: 238 IGRVKCEANG--------RQYSYCDEIAVATAIDEDKIAKKSQYLYVDVELNGTKTRGQV 289
Query: 51 LVTGTHSFWSSLPRP 7
+V T WS+ P
Sbjct: 290 VVDWTEQLWSNEEAP 304
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 267 NMTVVSPMATNALKRVRCPARV 202
NMT+ +PM T L+RV P R+
Sbjct: 1288 NMTIETPMETTVLERVELPFRL 1309
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 267 NMTVVSPMATNALKRVRCPARV 202
NMT+ +PM T L+RV P R+
Sbjct: 1288 NMTIETPMETTVLERVELPFRL 1309
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 280 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 408
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 241 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 155
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 241 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 155
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,633
Number of Sequences: 27780
Number of extensions: 340902
Number of successful extensions: 1118
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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