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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0961
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             151   3e-37
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   151   3e-37
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   151   3e-37
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           151   3e-37
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   151   3e-37
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   151   4e-37
At5g66310.1 68418.m08360 kinesin motor family protein contains P...    28   5.1  
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    28   5.1  
At2g07719.1 68415.m00969 expressed protein                             28   5.1  
At2g04050.1 68415.m00386 MATE efflux family protein similar to r...    28   5.1  
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    27   6.7  
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t...    27   8.9  
At4g29790.1 68417.m04242 expressed protein                             27   8.9  
At4g04745.1 68417.m00696 expressed protein                             27   8.9  
At2g37280.1 68415.m04573 ABC transporter family protein similar ...    27   8.9  

>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  151 bits (366), Expect = 3e-37
 Identities = 74/104 (71%), Positives = 83/104 (79%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 128 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 187

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           R++PA     +   +VPKK+LQ A     +T +S      LGNF
Sbjct: 188 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 230



 Score =  126 bits (305), Expect = 8e-30
 Identities = 58/82 (70%), Positives = 69/82 (84%)
 Frame = +2

Query: 8   GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
           GR  E++K WVPVTKLGRLV  G I ++E IYL SLP+KE++IID  +GP+L DEV+KIM
Sbjct: 46  GRASEEEK-WVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIM 104

Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
           PVQKQTRAGQRTRFKAFV +GD
Sbjct: 105 PVQKQTRAGQRTRFKAFVVVGD 126


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  151 bits (366), Expect = 3e-37
 Identities = 74/104 (71%), Positives = 83/104 (79%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           R++PA     +   +VPKK+LQ A     +T +S      LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229



 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/82 (73%), Positives = 69/82 (84%)
 Frame = +2

Query: 8   GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
           GR  E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIM
Sbjct: 45  GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103

Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
           PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  151 bits (366), Expect = 3e-37
 Identities = 74/104 (71%), Positives = 83/104 (79%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           R++PA     +   +VPKK+LQ A     +T +S      LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229



 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/82 (73%), Positives = 69/82 (84%)
 Frame = +2

Query: 8   GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
           GR  E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIM
Sbjct: 45  GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103

Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
           PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  151 bits (366), Expect = 3e-37
 Identities = 74/104 (71%), Positives = 83/104 (79%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           R++PA     +   +VPKK+LQ A     +T +S      LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229



 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/82 (73%), Positives = 69/82 (84%)
 Frame = +2

Query: 8   GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
           GR  E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIM
Sbjct: 45  GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103

Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
           PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  151 bits (366), Expect = 3e-37
 Identities = 74/104 (71%), Positives = 83/104 (79%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           R++PA     +   +VPKK+LQ A     +T +S      LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229



 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/82 (73%), Positives = 69/82 (84%)
 Frame = +2

Query: 8   GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
           GR  E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIM
Sbjct: 45  GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103

Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
           PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125


>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  151 bits (365), Expect = 4e-37
 Identities = 73/104 (70%), Positives = 83/104 (79%)
 Frame = +1

Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
           NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 119 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTV 178

Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
           R++PA     +   +VPKK+LQ A     +T +S      LGNF
Sbjct: 179 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 221



 Score =  134 bits (325), Expect = 3e-32
 Identities = 61/83 (73%), Positives = 73/83 (87%)
 Frame = +2

Query: 8   GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
           GR  E++K WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID  +GPSL DEV+KIM
Sbjct: 37  GRAPEEEK-WVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIM 95

Query: 188 PVQKQTRAGQRTRFKAFVAIGDT 256
           PVQKQTRAGQRTRFKAF+ +GD+
Sbjct: 96  PVQKQTRAGQRTRFKAFIVVGDS 118


>At5g66310.1 68418.m08360 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1063

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 VTRSESHTPSLARSPASVVL*QSX*FLPSWY 460
           +TRS S  PSL  SP+S  L +     PSWY
Sbjct: 715 LTRSRSCRPSLLSSPSSSWLEKDADTPPSWY 745


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +1

Query: 226 FQGICCHWRHNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 405
           F+ I       G++G+G   +KEV  A++ + I A+ +++ V        + K  T P +
Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQV-------PMTKYSTFPHR 221

Query: 406 VTGKCGSVTVRLIPA 450
             G  G+  V L PA
Sbjct: 222 SEGDYGAAKVMLRPA 236


>At2g07719.1 68415.m00969 expressed protein
          Length = 161

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +2

Query: 104 LFSLPIKEFEIIDFF----LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDTTVILV 271
           L+ L +  F+ I F     L    +   +  + ++K+T  G    F  +  +     + V
Sbjct: 2   LYGLRLYAFQEISFLDPWQLAAIFSGSCVLFISLEKRTLTGYMLTFILYSVLA--LFVSV 59

Query: 272 WV*SAARKSPLPFEALLSLL 331
           W+ SAA K+ +P E ++ LL
Sbjct: 60  WLSSAAGKAGIPIEGMVFLL 79


>At2g04050.1 68415.m00386 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 388 HTVPCKVTGKCGSVTVRL 441
           H VPCK T K G VTV L
Sbjct: 11  HLVPCKDTWKSGQVTVEL 28


>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
           (UBP16) similar to ubiquitin-specific protease 16
           GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 381 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVSPMATNALK 226
           +D ++P+ SSN  +  L K  SAS+ +G  LA L     + +++  A+N  K
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPLKV-GEVQLLASKASNTKK 454


>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
           SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2, SMUBP-2)
           [Mesocricetus auratus]
          Length = 961

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 213 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 121
           P R  FC+G+   +S  +  PR+KS +S+ L
Sbjct: 43  PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73


>At4g29790.1 68417.m04242 expressed protein
          Length = 1211

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 477 AQTQFQYHEGRNQXDCYRTTLAGDLARDGVWLSDLVTPVTSSN 349
           A  +F Y  G  +   YR+ LA  + R   +   +  PV+SS+
Sbjct: 3   APGKFDYSSGGPERPLYRSNLAAQMERSSSFRETMEHPVSSSH 45


>At4g04745.1 68417.m00696 expressed protein
          Length = 121

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
 Frame = +2

Query: 467 CVC----AKFLKSFFRWLCTGLATPSTR 538
           C+C     +FLKSF R+LC+  ++ S+R
Sbjct: 81  CICNNLITRFLKSFKRFLCSSSSSSSSR 108


>At2g37280.1 68415.m04573 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1413

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   GRGKEDQKEWVPVTKLGRLVREGKIDKL 91
           G G E  K+ V VTKLG + R   I+KL
Sbjct: 48  GEGTEKGKKVVDVTKLGAMERHLMIEKL 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,892
Number of Sequences: 28952
Number of extensions: 320831
Number of successful extensions: 868
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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