BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0961 (572 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 151 3e-37 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 151 3e-37 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 151 3e-37 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 151 3e-37 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 151 3e-37 At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 151 4e-37 At5g66310.1 68418.m08360 kinesin motor family protein contains P... 28 5.1 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 28 5.1 At2g07719.1 68415.m00969 expressed protein 28 5.1 At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.1 At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 6.7 At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 8.9 At4g29790.1 68417.m04242 expressed protein 27 8.9 At4g04745.1 68417.m00696 expressed protein 27 8.9 At2g37280.1 68415.m04573 ABC transporter family protein similar ... 27 8.9 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 151 bits (366), Expect = 3e-37 Identities = 74/104 (71%), Positives = 83/104 (79%) Frame = +1 Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435 NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV Sbjct: 128 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 187 Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567 R++PA + +VPKK+LQ A +T +S LGNF Sbjct: 188 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 230 Score = 126 bits (305), Expect = 8e-30 Identities = 58/82 (70%), Positives = 69/82 (84%) Frame = +2 Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187 GR E++K WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIM Sbjct: 46 GRASEEEK-WVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIM 104 Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253 PVQKQTRAGQRTRFKAFV +GD Sbjct: 105 PVQKQTRAGQRTRFKAFVVVGD 126 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 151 bits (366), Expect = 3e-37 Identities = 74/104 (71%), Positives = 83/104 (79%) Frame = +1 Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435 NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186 Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567 R++PA + +VPKK+LQ A +T +S LGNF Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229 Score = 128 bits (309), Expect = 3e-30 Identities = 60/82 (73%), Positives = 69/82 (84%) Frame = +2 Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187 GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103 Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253 PVQKQTRAGQRTRFKAFV +GD Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 151 bits (366), Expect = 3e-37 Identities = 74/104 (71%), Positives = 83/104 (79%) Frame = +1 Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435 NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186 Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567 R++PA + +VPKK+LQ A +T +S LGNF Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229 Score = 128 bits (309), Expect = 3e-30 Identities = 60/82 (73%), Positives = 69/82 (84%) Frame = +2 Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187 GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103 Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253 PVQKQTRAGQRTRFKAFV +GD Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 151 bits (366), Expect = 3e-37 Identities = 74/104 (71%), Positives = 83/104 (79%) Frame = +1 Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435 NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186 Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567 R++PA + +VPKK+LQ A +T +S LGNF Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229 Score = 128 bits (309), Expect = 3e-30 Identities = 60/82 (73%), Positives = 69/82 (84%) Frame = +2 Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187 GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103 Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253 PVQKQTRAGQRTRFKAFV +GD Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 151 bits (366), Expect = 3e-37 Identities = 74/104 (71%), Positives = 83/104 (79%) Frame = +1 Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435 NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186 Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567 R++PA + +VPKK+LQ A +T +S LGNF Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229 Score = 128 bits (309), Expect = 3e-30 Identities = 60/82 (73%), Positives = 69/82 (84%) Frame = +2 Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187 GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103 Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253 PVQKQTRAGQRTRFKAFV +GD Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 151 bits (365), Expect = 4e-37 Identities = 73/104 (70%), Positives = 83/104 (79%) Frame = +1 Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435 NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTV Sbjct: 119 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTV 178 Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567 R++PA + +VPKK+LQ A +T +S LGNF Sbjct: 179 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 221 Score = 134 bits (325), Expect = 3e-32 Identities = 61/83 (73%), Positives = 73/83 (87%) Frame = +2 Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187 GR E++K WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIM Sbjct: 37 GRAPEEEK-WVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIM 95 Query: 188 PVQKQTRAGQRTRFKAFVAIGDT 256 PVQKQTRAGQRTRFKAF+ +GD+ Sbjct: 96 PVQKQTRAGQRTRFKAFIVVGDS 118 >At5g66310.1 68418.m08360 kinesin motor family protein contains Pfam domain, PF00225: Kinesin motor domain Length = 1063 Score = 27.9 bits (59), Expect = 5.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 368 VTRSESHTPSLARSPASVVL*QSX*FLPSWY 460 +TRS S PSL SP+S L + PSWY Sbjct: 715 LTRSRSCRPSLLSSPSSSWLEKDADTPPSWY 745 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 27.9 bits (59), Expect = 5.1 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = +1 Query: 226 FQGICCHWRHNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 405 F+ I G++G+G +KEV A++ + I A+ +++ V + K T P + Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQV-------PMTKYSTFPHR 221 Query: 406 VTGKCGSVTVRLIPA 450 G G+ V L PA Sbjct: 222 SEGDYGAAKVMLRPA 236 >At2g07719.1 68415.m00969 expressed protein Length = 161 Score = 27.9 bits (59), Expect = 5.1 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Frame = +2 Query: 104 LFSLPIKEFEIIDFF----LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDTTVILV 271 L+ L + F+ I F L + + + ++K+T G F + + + V Sbjct: 2 LYGLRLYAFQEISFLDPWQLAAIFSGSCVLFISLEKRTLTGYMLTFILYSVLA--LFVSV 59 Query: 272 WV*SAARKSPLPFEALLSLL 331 W+ SAA K+ +P E ++ LL Sbjct: 60 WLSSAAGKAGIPIEGMVFLL 79 >At2g04050.1 68415.m00386 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 5.1 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +1 Query: 388 HTVPCKVTGKCGSVTVRL 441 H VPCK T K G VTV L Sbjct: 11 HLVPCKDTWKSGQVTVEL 28 >At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative (UBP16) similar to ubiquitin-specific protease 16 GI:11993477 [Arabidopsis thaliana] Length = 1008 Score = 27.5 bits (58), Expect = 6.7 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = -3 Query: 381 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVSPMATNALK 226 +D ++P+ SSN + L K SAS+ +G LA L + +++ A+N K Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPLKV-GEVQLLASKASNTKK 454 >At5g35970.1 68418.m04332 DNA-binding protein, putative similar to SWISS-PROT:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2, SMUBP-2) [Mesocricetus auratus] Length = 961 Score = 27.1 bits (57), Expect = 8.9 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 213 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 121 P R FC+G+ +S + PR+KS +S+ L Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73 >At4g29790.1 68417.m04242 expressed protein Length = 1211 Score = 27.1 bits (57), Expect = 8.9 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -3 Query: 477 AQTQFQYHEGRNQXDCYRTTLAGDLARDGVWLSDLVTPVTSSN 349 A +F Y G + YR+ LA + R + + PV+SS+ Sbjct: 3 APGKFDYSSGGPERPLYRSNLAAQMERSSSFRETMEHPVSSSH 45 >At4g04745.1 68417.m00696 expressed protein Length = 121 Score = 27.1 bits (57), Expect = 8.9 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 4/28 (14%) Frame = +2 Query: 467 CVC----AKFLKSFFRWLCTGLATPSTR 538 C+C +FLKSF R+LC+ ++ S+R Sbjct: 81 CICNNLITRFLKSFKRFLCSSSSSSSSR 108 >At2g37280.1 68415.m04573 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza] Length = 1413 Score = 27.1 bits (57), Expect = 8.9 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKL 91 G G E K+ V VTKLG + R I+KL Sbjct: 48 GEGTEKGKKVVDVTKLGAMERHLMIEKL 75 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,302,892 Number of Sequences: 28952 Number of extensions: 320831 Number of successful extensions: 868 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 868 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1112061928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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