Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0961
(572 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 151 3e-37
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 151 3e-37
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 151 3e-37
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 151 3e-37
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 151 3e-37
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 151 4e-37
At5g66310.1 68418.m08360 kinesin motor family protein contains P... 28 5.1
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 28 5.1
At2g07719.1 68415.m00969 expressed protein 28 5.1
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.1
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 6.7
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 8.9
At4g29790.1 68417.m04242 expressed protein 27 8.9
At4g04745.1 68417.m00696 expressed protein 27 8.9
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 27 8.9
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 151 bits (366), Expect = 3e-37
Identities = 74/104 (71%), Positives = 83/104 (79%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 128 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 187
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
R++PA + +VPKK+LQ A +T +S LGNF
Sbjct: 188 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 230
Score = 126 bits (305), Expect = 8e-30
Identities = 58/82 (70%), Positives = 69/82 (84%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
GR E++K WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIM
Sbjct: 46 GRASEEEK-WVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIM 104
Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
PVQKQTRAGQRTRFKAFV +GD
Sbjct: 105 PVQKQTRAGQRTRFKAFVVVGD 126
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 151 bits (366), Expect = 3e-37
Identities = 74/104 (71%), Positives = 83/104 (79%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
R++PA + +VPKK+LQ A +T +S LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229
Score = 128 bits (309), Expect = 3e-30
Identities = 60/82 (73%), Positives = 69/82 (84%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM
Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103
Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 151 bits (366), Expect = 3e-37
Identities = 74/104 (71%), Positives = 83/104 (79%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
R++PA + +VPKK+LQ A +T +S LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229
Score = 128 bits (309), Expect = 3e-30
Identities = 60/82 (73%), Positives = 69/82 (84%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM
Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103
Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 151 bits (366), Expect = 3e-37
Identities = 74/104 (71%), Positives = 83/104 (79%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
R++PA + +VPKK+LQ A +T +S LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229
Score = 128 bits (309), Expect = 3e-30
Identities = 60/82 (73%), Positives = 69/82 (84%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM
Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103
Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 151 bits (366), Expect = 3e-37
Identities = 74/104 (71%), Positives = 83/104 (79%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
R++PA + +VPKK+LQ A +T +S LGNF
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 229
Score = 128 bits (309), Expect = 3e-30
Identities = 60/82 (73%), Positives = 69/82 (84%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
GR E+ K WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIM
Sbjct: 45 GRASEETK-WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIM 103
Query: 188 PVQKQTRAGQRTRFKAFVAIGD 253
PVQKQTRAGQRTRFKAFV +GD
Sbjct: 104 PVQKQTRAGQRTRFKAFVVVGD 125
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 151 bits (365), Expect = 4e-37
Identities = 73/104 (70%), Positives = 83/104 (79%)
Frame = +1
Query: 256 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 435
NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 119 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTV 178
Query: 436 RLIPALVVLELCLRQVPKKLLQMAVYRTCYTFNSLVQLAPLGNF 567
R++PA + +VPKK+LQ A +T +S LGNF
Sbjct: 179 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFT-SSRGSTKTLGNF 221
Score = 134 bits (325), Expect = 3e-32
Identities = 61/83 (73%), Positives = 73/83 (87%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIM 187
GR E++K WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIM
Sbjct: 37 GRAPEEEK-WVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIM 95
Query: 188 PVQKQTRAGQRTRFKAFVAIGDT 256
PVQKQTRAGQRTRFKAF+ +GD+
Sbjct: 96 PVQKQTRAGQRTRFKAFIVVGDS 118
>At5g66310.1 68418.m08360 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1063
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 368 VTRSESHTPSLARSPASVVL*QSX*FLPSWY 460
+TRS S PSL SP+S L + PSWY
Sbjct: 715 LTRSRSCRPSLLSSPSSSWLEKDADTPPSWY 745
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +1
Query: 226 FQGICCHWRHNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 405
F+ I G++G+G +KEV A++ + I A+ +++ V + K T P +
Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQV-------PMTKYSTFPHR 221
Query: 406 VTGKCGSVTVRLIPA 450
G G+ V L PA
Sbjct: 222 SEGDYGAAKVMLRPA 236
>At2g07719.1 68415.m00969 expressed protein
Length = 161
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 104 LFSLPIKEFEIIDFF----LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDTTVILV 271
L+ L + F+ I F L + + + ++K+T G F + + + V
Sbjct: 2 LYGLRLYAFQEISFLDPWQLAAIFSGSCVLFISLEKRTLTGYMLTFILYSVLA--LFVSV 59
Query: 272 WV*SAARKSPLPFEALLSLL 331
W+ SAA K+ +P E ++ LL
Sbjct: 60 WLSSAAGKAGIPIEGMVFLL 79
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 388 HTVPCKVTGKCGSVTVRL 441
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -3
Query: 381 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVSPMATNALK 226
+D ++P+ SSN + L K SAS+ +G LA L + +++ A+N K
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPLKV-GEVQLLASKASNTKK 454
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 213 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 121
P R FC+G+ +S + PR+KS +S+ L
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73
>At4g29790.1 68417.m04242 expressed protein
Length = 1211
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 477 AQTQFQYHEGRNQXDCYRTTLAGDLARDGVWLSDLVTPVTSSN 349
A +F Y G + YR+ LA + R + + PV+SS+
Sbjct: 3 APGKFDYSSGGPERPLYRSNLAAQMERSSSFRETMEHPVSSSH 45
>At4g04745.1 68417.m00696 expressed protein
Length = 121
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Frame = +2
Query: 467 CVC----AKFLKSFFRWLCTGLATPSTR 538
C+C +FLKSF R+LC+ ++ S+R
Sbjct: 81 CICNNLITRFLKSFKRFLCSSSSSSSSR 108
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 8 GRGKEDQKEWVPVTKLGRLVREGKIDKL 91
G G E K+ V VTKLG + R I+KL
Sbjct: 48 GEGTEKGKKVVDVTKLGAMERHLMIEKL 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,892
Number of Sequences: 28952
Number of extensions: 320831
Number of successful extensions: 868
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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