BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0910 (616 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 32 0.057 SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 29 0.71 SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 28 0.93 SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 28 0.93 SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.2 SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 28 1.2 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.2 SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 1.6 SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 27 2.2 SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.8 SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 2.8 SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 3.8 SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 5.0 SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 5.0 SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 5.0 SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 6.6 SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 25 6.6 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.6 SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 8.7 SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.7 SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 8.7 SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 8.7 >SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 817 Score = 32.3 bits (70), Expect = 0.057 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Frame = +3 Query: 264 EKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHD-RQEELNDLLAKLDELQAQAKNDV 440 E ++ RL E + L ++EG ++ HD ++ L + L E K + Sbjct: 317 ENELKISRLQEEKDSLLKKVQEGASLAMQRVQNKHDLEKKRLQSAIQPLQEENNSLKQQI 376 Query: 441 ELTKATLTAANEIYKTLKEFSDQ*PSRTSK 530 E + L + + + LK DQ + K Sbjct: 377 EQLQRELASETVVKENLKSSLDQQSANVQK 406 >SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharomyces pombe|chr 1|||Manual Length = 461 Score = 28.7 bits (61), Expect = 0.71 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = +3 Query: 336 RRGRDLLEQGHDRQEELNDLLAKLDELQAQAKN 434 +R DLL + + Q++L ++LA +D+LQ+ N Sbjct: 140 KRIEDLLYERQNHQQQLEEVLATVDQLQSLVTN 172 >SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr 1|||Manual Length = 1854 Score = 28.3 bits (60), Expect = 0.93 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 370 TGRRNSTISSLSWMSCRRKLKTMWNSRKPR*QP 468 TG T +W+ RRK+K+M S++P +P Sbjct: 1220 TGSAFFTAEQRAWLELRRKIKSMRPSKRPAIRP 1252 >SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 493 Score = 28.3 bits (60), Expect = 0.93 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 438 VELTKATLTAANEIYKTLKEFS 503 VE TK ++AANE +KT K F+ Sbjct: 54 VEETKKAISAANEAFKTYKNFT 75 >SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr 1|||Manual Length = 161 Score = 27.9 bits (59), Expect = 1.2 Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = +3 Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEE-LNDLLAKLDELQAQAKN 434 ++E++ +L RL A+NED E + R +LLE+ + ++ L + K+ + +A++ Sbjct: 60 LEEETKQL-RLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEH 118 Query: 435 DVELTKATLTAANEIYKTLKEFSDQ 509 ++ +++ + L+E +D+ Sbjct: 119 FERRVQSLERERDDMEQKLEEMTDK 143 >SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosaccharomyces pombe|chr 1|||Manual Length = 1030 Score = 27.9 bits (59), Expect = 1.2 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 8/54 (14%) Frame = -3 Query: 515 RSLITELF*SLVNLICGCQRGFREFHIVFSLRLQ--------LIQLSEEIVEFL 378 + L+TE+F S +N + RG R+F + SL L+ L+ + +E+VE L Sbjct: 401 KELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEIL 454 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 27.9 bits (59), Expect = 1.2 Identities = 14/56 (25%), Positives = 32/56 (57%) Frame = +3 Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQ 425 ++ ++E+DRL E ++ ++E I +DL E+ QEE +++++ ++ Q Sbjct: 3324 LEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQ 3379 >SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual Length = 295 Score = 27.5 bits (58), Expect = 1.6 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 375 QEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 485 Q+E N+LL +L+ LQAQ KN + + +E+ K Sbjct: 87 QKENNELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVK 123 >SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosaccharomyces pombe|chr 3|||Manual Length = 254 Score = 27.1 bits (57), Expect = 2.2 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +3 Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAK 431 DE + L +L E + N++ + + L + HD +E+L + AK+DE+ A+ K Sbjct: 144 DEINERLKKLTEEQQ----NVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENK 196 >SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1115 Score = 26.6 bits (56), Expect = 2.8 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = +3 Query: 273 AELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTK 452 AE+D L ENE+ ++ I L + +D + LN+ + L++ +Q K ++E Sbjct: 659 AEVDSLRKENEEN----KQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVT 714 Query: 453 ATLTAANEIYKTLKE 497 + + + LKE Sbjct: 715 TSKESLADYLSNLKE 729 >SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 872 Score = 26.6 bits (56), Expect = 2.8 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 378 EELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 485 E N A L KN++ LT A L + +EIYK Sbjct: 142 ENTNVCKASLYRFMLMCKNELGLTDAALFSISEIYK 177 >SPBC800.10c |||EPS15 repeat family actin cortical patch component |Schizosaccharomyces pombe|chr 2|||Manual Length = 1116 Score = 26.2 bits (55), Expect = 3.8 Identities = 16/64 (25%), Positives = 34/64 (53%) Frame = +3 Query: 264 EKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVE 443 +K L++++AE+E + +E + L + D+++ L L +LDE+ + + E Sbjct: 591 QKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDE 650 Query: 444 LTKA 455 +KA Sbjct: 651 ESKA 654 >SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosaccharomyces pombe|chr 3|||Manual Length = 680 Score = 25.8 bits (54), Expect = 5.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 258 IDEKSAELDRLIAENEDTLHNLE 326 +D E+D+LI E E+ L+N+E Sbjct: 261 LDSNVNEMDKLIMERENALNNVE 283 >SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual Length = 657 Score = 25.8 bits (54), Expect = 5.0 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +3 Query: 270 SAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELT 449 S++ +L E E L EE DL+ +Q+ LN++ EL KN+ + Sbjct: 458 SSKFSQLAEEYESQLREKEE------DLIRANRLKQDTLNEISRTYQELTFLQKNNPTYS 511 Query: 450 KATLTAANEIYKTLKEFS 503 ++ E +T ++ S Sbjct: 512 QSMENLIREAQETYQQLS 529 >SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1400 Score = 25.8 bits (54), Expect = 5.0 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +3 Query: 357 EQGHDRQEELNDLLAKLDELQAQAKN 434 + H E+++D+L +DEL++ +KN Sbjct: 1042 QANHQSSEKMSDILKGVDELRSVSKN 1067 >SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccharomyces pombe|chr 3|||Manual Length = 721 Score = 25.4 bits (53), Expect = 6.6 Identities = 14/82 (17%), Positives = 41/82 (50%) Frame = +3 Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDV 440 +E ++ L+ + D +++ ++ + +++E+ +E+ ++++ +LD +ND Sbjct: 40 EEDESDFVELLEKELDKVYSFQKN--KSAEVMERIRFCEEQTDEVVRRLDSDNPPNENDF 97 Query: 441 ELTKATLTAANEIYKTLKEFSD 506 + + LT L +FS+ Sbjct: 98 AILETELTDIMATVHDLAKFSE 119 >SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pombe|chr 1|||Manual Length = 240 Score = 25.4 bits (53), Expect = 6.6 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = +3 Query: 306 DTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVEL---TKATLTAANE 476 D++ + + IR G L+ Q DR+EE+ +++K L KN + + TK + A N+ Sbjct: 21 DSIISQDGSIRLGPGLVFQKKDREEEI--VVSKAGRLHQTGKNAMLIDSRTKRYIPATND 78 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 25.4 bits (53), Expect = 6.6 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = +3 Query: 294 AENEDTLHNLEEGIRRGR----DLLEQGHDRQEELNDLLAKLDEL--QAQAKNDVELTKA 455 AE + +H+LEEG + +L + D Q N L +LD L + + K DV K Sbjct: 1358 AEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKE 1417 Query: 456 TLTAANE 476 +L + E Sbjct: 1418 SLIISLE 1424 >SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosaccharomyces pombe|chr 2|||Manual Length = 1172 Score = 25.0 bits (52), Expect = 8.7 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +3 Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGR-DLLEQGHDRQEELNDLLAKLDE 413 + ++ ELDRLI +++ + +E ++ + + + + ++E N KLDE Sbjct: 756 LKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDE 808 >SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 394 Score = 25.0 bits (52), Expect = 8.7 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +1 Query: 373 GRRNSTISSLSWMSCRRKLKTMWN 444 G +ST+ SLS R K K WN Sbjct: 337 GHASSTVGSLSKEEARFKAKAKWN 360 >SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2310 Score = 25.0 bits (52), Expect = 8.7 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = +1 Query: 10 NKIAKDGINKQANISNEV---QILTNELNAASGKLNSMTELADQALK 141 +K+ K + K + NE Q++T SGK N + +AD+A K Sbjct: 359 DKLPKQHLFKYRPVDNEATYCQVVTVTGEKGSGKSNLLNAVADEARK 405 >SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces pombe|chr 1|||Manual Length = 1159 Score = 25.0 bits (52), Expect = 8.7 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +3 Query: 288 LIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELT 449 + + +D H L R R LE+GH + D LDE+ A ++DV T Sbjct: 311 MFIDKQDIYHRLSTPTSRKRQTLEKGHIKAFSAVD--EDLDEIFA-CEDDVHYT 361 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,051,650 Number of Sequences: 5004 Number of extensions: 35127 Number of successful extensions: 166 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 166 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 269634532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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