Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0910
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 32 0.057
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 29 0.71
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 28 0.93
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 28 0.93
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.2
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 28 1.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 1.6
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 27 2.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 2.8
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 3.8
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 5.0
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 5.0
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 5.0
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 6.6
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 25 6.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.6
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 8.7
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.7
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 8.7
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 8.7
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 32.3 bits (70), Expect = 0.057
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +3
Query: 264 EKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHD-RQEELNDLLAKLDELQAQAKNDV 440
E ++ RL E + L ++EG ++ HD ++ L + L E K +
Sbjct: 317 ENELKISRLQEEKDSLLKKVQEGASLAMQRVQNKHDLEKKRLQSAIQPLQEENNSLKQQI 376
Query: 441 ELTKATLTAANEIYKTLKEFSDQ*PSRTSK 530
E + L + + + LK DQ + K
Sbjct: 377 EQLQRELASETVVKENLKSSLDQQSANVQK 406
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 336 RRGRDLLEQGHDRQEELNDLLAKLDELQAQAKN 434
+R DLL + + Q++L ++LA +D+LQ+ N
Sbjct: 140 KRIEDLLYERQNHQQQLEEVLATVDQLQSLVTN 172
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 370 TGRRNSTISSLSWMSCRRKLKTMWNSRKPR*QP 468
TG T +W+ RRK+K+M S++P +P
Sbjct: 1220 TGSAFFTAEQRAWLELRRKIKSMRPSKRPAIRP 1252
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 438 VELTKATLTAANEIYKTLKEFS 503
VE TK ++AANE +KT K F+
Sbjct: 54 VEETKKAISAANEAFKTYKNFT 75
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEE-LNDLLAKLDELQAQAKN 434
++E++ +L RL A+NED E + R +LLE+ + ++ L + K+ + +A++
Sbjct: 60 LEEETKQL-RLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEH 118
Query: 435 DVELTKATLTAANEIYKTLKEFSDQ 509
++ +++ + L+E +D+
Sbjct: 119 FERRVQSLERERDDMEQKLEEMTDK 143
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Frame = -3
Query: 515 RSLITELF*SLVNLICGCQRGFREFHIVFSLRLQ--------LIQLSEEIVEFL 378
+ L+TE+F S +N + RG R+F + SL L+ L+ + +E+VE L
Sbjct: 401 KELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEIL 454
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +3
Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQ 425
++ ++E+DRL E ++ ++E I +DL E+ QEE +++++ ++ Q
Sbjct: 3324 LEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQ 3379
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 375 QEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 485
Q+E N+LL +L+ LQAQ KN + + +E+ K
Sbjct: 87 QKENNELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVK 123
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAK 431
DE + L +L E + N++ + + L + HD +E+L + AK+DE+ A+ K
Sbjct: 144 DEINERLKKLTEEQQ----NVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENK 196
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +3
Query: 273 AELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTK 452
AE+D L ENE+ ++ I L + +D + LN+ + L++ +Q K ++E
Sbjct: 659 AEVDSLRKENEEN----KQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVT 714
Query: 453 ATLTAANEIYKTLKE 497
+ + + LKE
Sbjct: 715 TSKESLADYLSNLKE 729
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 378 EELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 485
E N A L KN++ LT A L + +EIYK
Sbjct: 142 ENTNVCKASLYRFMLMCKNELGLTDAALFSISEIYK 177
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +3
Query: 264 EKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVE 443
+K L++++AE+E + +E + L + D+++ L L +LDE+ + + E
Sbjct: 591 QKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDE 650
Query: 444 LTKA 455
+KA
Sbjct: 651 ESKA 654
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 258 IDEKSAELDRLIAENEDTLHNLE 326
+D E+D+LI E E+ L+N+E
Sbjct: 261 LDSNVNEMDKLIMERENALNNVE 283
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +3
Query: 270 SAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELT 449
S++ +L E E L EE DL+ +Q+ LN++ EL KN+ +
Sbjct: 458 SSKFSQLAEEYESQLREKEE------DLIRANRLKQDTLNEISRTYQELTFLQKNNPTYS 511
Query: 450 KATLTAANEIYKTLKEFS 503
++ E +T ++ S
Sbjct: 512 QSMENLIREAQETYQQLS 529
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 357 EQGHDRQEELNDLLAKLDELQAQAKN 434
+ H E+++D+L +DEL++ +KN
Sbjct: 1042 QANHQSSEKMSDILKGVDELRSVSKN 1067
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/82 (17%), Positives = 41/82 (50%)
Frame = +3
Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDV 440
+E ++ L+ + D +++ ++ + +++E+ +E+ ++++ +LD +ND
Sbjct: 40 EEDESDFVELLEKELDKVYSFQKN--KSAEVMERIRFCEEQTDEVVRRLDSDNPPNENDF 97
Query: 441 ELTKATLTAANEIYKTLKEFSD 506
+ + LT L +FS+
Sbjct: 98 AILETELTDIMATVHDLAKFSE 119
>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 306 DTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVEL---TKATLTAANE 476
D++ + + IR G L+ Q DR+EE+ +++K L KN + + TK + A N+
Sbjct: 21 DSIISQDGSIRLGPGLVFQKKDREEEI--VVSKAGRLHQTGKNAMLIDSRTKRYIPATND 78
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 6.6
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = +3
Query: 294 AENEDTLHNLEEGIRRGR----DLLEQGHDRQEELNDLLAKLDEL--QAQAKNDVELTKA 455
AE + +H+LEEG + +L + D Q N L +LD L + + K DV K
Sbjct: 1358 AEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKE 1417
Query: 456 TLTAANE 476
+L + E
Sbjct: 1418 SLIISLE 1424
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGR-DLLEQGHDRQEELNDLLAKLDE 413
+ ++ ELDRLI +++ + +E ++ + + + + ++E N KLDE
Sbjct: 756 LKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDE 808
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 373 GRRNSTISSLSWMSCRRKLKTMWN 444
G +ST+ SLS R K K WN
Sbjct: 337 GHASSTVGSLSKEEARFKAKAKWN 360
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 10 NKIAKDGINKQANISNEV---QILTNELNAASGKLNSMTELADQALK 141
+K+ K + K + NE Q++T SGK N + +AD+A K
Sbjct: 359 DKLPKQHLFKYRPVDNEATYCQVVTVTGEKGSGKSNLLNAVADEARK 405
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 288 LIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELT 449
+ + +D H L R R LE+GH + D LDE+ A ++DV T
Sbjct: 311 MFIDKQDIYHRLSTPTSRKRQTLEKGHIKAFSAVD--EDLDEIFA-CEDDVHYT 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,650
Number of Sequences: 5004
Number of extensions: 35127
Number of successful extensions: 166
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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