Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0910
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73570.1 68414.m08517 suppressor of lin-12-like protein-relat... 33 0.15
At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi... 33 0.20
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 32 0.35
At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein... 31 0.61
At1g22260.1 68414.m02782 expressed protein 31 0.80
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 30 1.1
At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin... 29 1.9
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 29 1.9
At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.4
At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.4
At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.4
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 29 3.2
At3g48860.2 68416.m05337 expressed protein 28 4.3
At3g48860.1 68416.m05336 expressed protein 28 4.3
At2g42880.1 68415.m05309 mitogen-activated protein kinase, putat... 28 4.3
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 28 4.3
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 28 5.7
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si... 27 9.9
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 27 9.9
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 27 9.9
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ... 27 9.9
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 27 9.9
>At1g73570.1 68414.m08517 suppressor of lin-12-like protein-related
/ sel-1 protein-related similar to Sel-1 homolog
precursor (Suppressor of lin-12-like protein)
(Sel-1L)(SP:Q9UBV2) {Homo sapiens}
Length = 604
Score = 33.1 bits (72), Expect = 0.15
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 28 GINKQANISNEVQILTNELNAASGKLNSMTELADQALKRARAVYDEALGLYAEVNTTLLP 207
GI S IL + AA G + S LA + L++ +YD+A+ LYAE+ T +
Sbjct: 136 GIGMMRETSRSKSILHHHFAAAGGNMQSKMALAFRYLRQN--MYDKAVELYAELAETAVN 193
Query: 208 DIKLNK 225
++K
Sbjct: 194 SFLISK 199
>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 697
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 145 ARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNRRLMRN 270
+R V+DE + V T LL LNK HED++ + ++RN
Sbjct: 279 SRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRN 320
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 31.9 bits (69), Expect = 0.35
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +3
Query: 264 EKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAK 431
EKS +++ L+++ EDT L R R L Q + Q D KL+EL Q K
Sbjct: 422 EKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDLQVK 477
>At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein
contains Pfam profile PF00488: MutS domain V
Length = 857
Score = 31.1 bits (67), Expect = 0.61
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 276 ELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDR-QEELNDLLAKLDELQAQAKNDVELTK 452
+L L E E H+L+ +R R LL++ + QE+LN +K++ L A+ ++ +E+T+
Sbjct: 618 DLMNLYHELEHESHDLD---KRERALLKKETQKVQEDLNSAKSKMERLVAEFESQLEITQ 674
Query: 453 A 455
A
Sbjct: 675 A 675
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/84 (23%), Positives = 40/84 (47%)
Frame = +3
Query: 255 TIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKN 434
TID+ +E L++++ D + + LLE +++ +L KL L+ ++K
Sbjct: 392 TIDKLESEAKGLVSKHADAESAISQLKEEMETLLESVKTSEDKKQELSLKLSSLEMESKE 451
Query: 435 DVELTKATLTAANEIYKTLKEFSD 506
E +A E +TL++ S+
Sbjct: 452 KCEKLQADAQRQVEELETLQKESE 475
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 285 RLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTKATLT 464
+L + +D + I+ D LEQ + + E+ D L +L+ ++ ++ V+ T
Sbjct: 304 KLELDVKDFQDRITGNIQSKNDALEQLNTVEREMQDSLRELEAIKPLYESQVDKENQTSK 363
Query: 465 AANEIYKTL 491
NE+ KTL
Sbjct: 364 RINELEKTL 372
>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
PIR2:I46014
Length = 452
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 275 RAGPFDS*ERRHPSQFRGGHKARSGLAGTRSRQAGGTQRSP 397
+ G F+S R SQ+ GG + S G R ++G SP
Sbjct: 231 KRGSFESLSRNRDSQYGGGGGSESDTWGRRREESGAANGSP 271
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 31 INKQANISNEVQILTNELNAAS----GKLNSMTELADQALKRARAVYDEALGLYAEVNTT 198
+++ ++ +E++ + +E N A KL S+TE AD++ KRA E LG NT
Sbjct: 434 MSQYESLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAENA-TEQLGAAQVTNTE 492
Query: 199 LLPDIKLNKLHED 237
L +++ K+ D
Sbjct: 493 LEAELRRLKVQCD 505
>At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 251
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 291 IAENEDTLHNLEEGIRRGRDLLEQGHDRQEEL-NDLLAKLDELQAQAKNDVELTKATLTA 467
I + E++ N +E ++R ++ ++ D ++ ND+L+ +D+ + N VE T
Sbjct: 67 IEQKEESKGN-DENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTVFFYKM 125
Query: 468 ANEIYKTLKEFS 503
+ Y+ L EFS
Sbjct: 126 KGDYYRYLAEFS 137
>At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 291 IAENEDTLHNLEEGIRRGRDLLEQGHDRQEEL-NDLLAKLDELQAQAKNDVELTKATLTA 467
I + E++ N +E ++R ++ ++ D ++ ND+L+ +D+ + N VE T
Sbjct: 67 IEQKEESKGN-DENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTVFFYKM 125
Query: 468 ANEIYKTLKEFS 503
+ Y+ L EFS
Sbjct: 126 KGDYYRYLAEFS 137
>At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 291 IAENEDTLHNLEEGIRRGRDLLEQGHDRQEEL-NDLLAKLDELQAQAKNDVELTKATLTA 467
I + E++ N +E ++R ++ ++ D ++ ND+L+ +D+ + N VE T
Sbjct: 67 IEQKEESKGN-DENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTVFFYKM 125
Query: 468 ANEIYKTLKEFS 503
+ Y+ L EFS
Sbjct: 126 KGDYYRYLAEFS 137
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = +3
Query: 273 AELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTK 452
AEL+ + +NED ++EE ++ ++ EE D+ K+DE + K D E +K
Sbjct: 268 AELEEKLIKNED---DIEEKTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTE-SK 323
Query: 453 ATLTAANEIYKTLKEFSDQ*PSRTSKRSKPR 545
+ + +E ++ R + K +
Sbjct: 324 EVESVEETTQEKEEEVKEEGKERVEEEEKEK 354
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 28.3 bits (60), Expect = 4.3
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +3
Query: 243 GDE*TIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDE--- 413
GD+ ELD L ENE+ L E +RR + + R +EL +A L E
Sbjct: 209 GDQREASALRDELDMLQEENENVL----EKLRRAEEKRVEAEARAKELEKQVASLGEGVS 264
Query: 414 LQAQAKNDVELTKATLTAANEIYKTLKEFSDQ 509
L+A+ + E AA + K K D+
Sbjct: 265 LEAKLLSRKEAALRQREAALNVAKQKKSGKDE 296
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 28.3 bits (60), Expect = 4.3
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +3
Query: 243 GDE*TIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDE--- 413
GD+ ELD L ENE+ L E +RR + + R +EL +A L E
Sbjct: 209 GDQREASALRDELDMLQEENENVL----EKLRRAEEKRVEAEARAKELEKQVASLGEGVS 264
Query: 414 LQAQAKNDVELTKATLTAANEIYKTLKEFSDQ 509
L+A+ + E AA + K K D+
Sbjct: 265 LEAKLLSRKEAALRQREAALNVAKQKKSGKDE 296
>At2g42880.1 68415.m05309 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK20) mitogen-activated protein
kinase (MAPK)(AtMPK20), PMID:12119167
Length = 606
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 16 IAKDGINKQANISNEVQILTNELNAASG 99
+A+ G+NK NIS+ + I TN L A +G
Sbjct: 548 MARTGMNKAENISDRIIIDTNLLQATAG 575
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKND 437
+DEKS E+D ED NL + I+ +L++ + ++ D L E + D
Sbjct: 705 LDEKSNEIDNQKRHEEDVTANLNQEIK----ILKEEIENLKKNQDSLMLQAEQAENLRVD 760
Query: 438 VELTKATLTAA 470
+E TK ++ A
Sbjct: 761 LEKTKKSVMEA 771
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +3
Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDV 440
+EK A D++ +N++ EG +R ++ ++EE L K + LQ K
Sbjct: 287 EEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKK-- 344
Query: 441 ELTKATLTAANEIYKTLKEFSDQ*PSRTSK 530
E T + E K K+ + P++ K
Sbjct: 345 EKTDNIIKKTKETAKNKKKNENVDPNKPKK 374
>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase, Zea mays,
PIR2:JQ1329; contains non-consensus (GC) donor splice
site at intron 4
Length = 1050
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 324 EEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTKATLTAANE 476
++G+R + +E+ R + DLL++L E + + KND E K+ + E
Sbjct: 120 DDGVRLSKRRIEREQGRNDAEEDLLSELSEGE-KDKNDGEKEKSEVVTTLE 169
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKND 437
I+ K +E+ +L AEN++ L E ++ DL Q +LN L EL+ +
Sbjct: 393 IEGKLSEMKKLEAENQELELLLGESGKQMEDL-------QRQLNKAQVNLSELETRRAEK 445
Query: 438 VELT 449
+ELT
Sbjct: 446 LELT 449
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 279 LDRLIAENEDTLHNLEEGIRRGRDLLE-QGHDRQEELNDLLAKLDELQAQAKNDVELTKA 455
+DR + ++ DTL ++ EG+ LE + H+ + ++DL +D + K
Sbjct: 134 IDRTMKKHTDTLLHVMEGVSARLSQLETRTHNLENLVDDLKVSVDNSHGSTDGKMRQLKN 193
Query: 456 TLTAANEIYKTLKEFSDQ*PSRTSK 530
L + LK+ + ++ SK
Sbjct: 194 ILVEVQSGVQLLKDKQEILEAQLSK 218
>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 573
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 381 ELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQ*P 515
E+ +L ++DE A+ N T L A LKEFSD+ P
Sbjct: 198 EITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAP 242
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLD----ELQAQA 428
+EK +L+ + +N L + + RDL E + E+L +L+ E+
Sbjct: 257 EEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEAT 316
Query: 429 KNDVELTKATLTAANEIYKTLKEFSDQ 509
+EL + ++ KT+++FS +
Sbjct: 317 TRSIELEALHKHSELKVQKTMEDFSSR 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,400
Number of Sequences: 28952
Number of extensions: 189485
Number of successful extensions: 690
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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