BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0910 (616 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g73570.1 68414.m08517 suppressor of lin-12-like protein-relat... 33 0.15 At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi... 33 0.20 At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 32 0.35 At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein... 31 0.61 At1g22260.1 68414.m02782 expressed protein 31 0.80 At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 30 1.1 At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin... 29 1.9 At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 29 1.9 At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.4 At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.4 At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.4 At5g24880.1 68418.m02946 expressed protein ; expression supporte... 29 3.2 At3g48860.2 68416.m05337 expressed protein 28 4.3 At3g48860.1 68416.m05336 expressed protein 28 4.3 At2g42880.1 68415.m05309 mitogen-activated protein kinase, putat... 28 4.3 At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 28 4.3 At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 28 5.7 At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si... 27 9.9 At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 27 9.9 At3g01560.1 68416.m00086 proline-rich family protein contains pr... 27 9.9 At1g34050.1 68414.m04221 ankyrin repeat family protein contains ... 27 9.9 At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 27 9.9 >At1g73570.1 68414.m08517 suppressor of lin-12-like protein-related / sel-1 protein-related similar to Sel-1 homolog precursor (Suppressor of lin-12-like protein) (Sel-1L)(SP:Q9UBV2) {Homo sapiens} Length = 604 Score = 33.1 bits (72), Expect = 0.15 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = +1 Query: 28 GINKQANISNEVQILTNELNAASGKLNSMTELADQALKRARAVYDEALGLYAEVNTTLLP 207 GI S IL + AA G + S LA + L++ +YD+A+ LYAE+ T + Sbjct: 136 GIGMMRETSRSKSILHHHFAAAGGNMQSKMALAFRYLRQN--MYDKAVELYAELAETAVN 193 Query: 208 DIKLNK 225 ++K Sbjct: 194 SFLISK 199 >At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 697 Score = 32.7 bits (71), Expect = 0.20 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +1 Query: 145 ARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNRRLMRN 270 +R V+DE + V T LL LNK HED++ + ++RN Sbjct: 279 SRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRN 320 >At2g45460.1 68415.m05654 forkhead-associated domain-containing protein / FHA domain-containing protein Length = 915 Score = 31.9 bits (69), Expect = 0.35 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = +3 Query: 264 EKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAK 431 EKS +++ L+++ EDT L R R L Q + Q D KL+EL Q K Sbjct: 422 EKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDLQVK 477 >At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein contains Pfam profile PF00488: MutS domain V Length = 857 Score = 31.1 bits (67), Expect = 0.61 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 276 ELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDR-QEELNDLLAKLDELQAQAKNDVELTK 452 +L L E E H+L+ +R R LL++ + QE+LN +K++ L A+ ++ +E+T+ Sbjct: 618 DLMNLYHELEHESHDLD---KRERALLKKETQKVQEDLNSAKSKMERLVAEFESQLEITQ 674 Query: 453 A 455 A Sbjct: 675 A 675 >At1g22260.1 68414.m02782 expressed protein Length = 857 Score = 30.7 bits (66), Expect = 0.80 Identities = 20/84 (23%), Positives = 40/84 (47%) Frame = +3 Query: 255 TIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKN 434 TID+ +E L++++ D + + LLE +++ +L KL L+ ++K Sbjct: 392 TIDKLESEAKGLVSKHADAESAISQLKEEMETLLESVKTSEDKKQELSLKLSSLEMESKE 451 Query: 435 DVELTKATLTAANEIYKTLKEFSD 506 E +A E +TL++ S+ Sbjct: 452 KCEKLQADAQRQVEELETLQKESE 475 >At2g27170.1 68415.m06029 structural maintenance of chromosomes (SMC) family protein similar to basement membrane-associated chondroitin proteoglycan Bamacan [Rattus norvegicus] GI:1785540; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domain. No suitalble start codon was identified. Length = 1207 Score = 30.3 bits (65), Expect = 1.1 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +3 Query: 285 RLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTKATLT 464 +L + +D + I+ D LEQ + + E+ D L +L+ ++ ++ V+ T Sbjct: 304 KLELDVKDFQDRITGNIQSKNDALEQLNTVEREMQDSLRELEAIKPLYESQVDKENQTSK 363 Query: 465 AANEIYKTL 491 NE+ KTL Sbjct: 364 RINELEKTL 372 >At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine, PIR2:I46014 Length = 452 Score = 29.5 bits (63), Expect = 1.9 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 275 RAGPFDS*ERRHPSQFRGGHKARSGLAGTRSRQAGGTQRSP 397 + G F+S R SQ+ GG + S G R ++G SP Sbjct: 231 KRGSFESLSRNRDSQYGGGGGSESDTWGRRREESGAANGSP 271 >At2g37080.1 68415.m04550 myosin heavy chain-related low similarity to myosin heavy chain [Rana catesbeiana] GI:4249701 Length = 583 Score = 29.5 bits (63), Expect = 1.9 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = +1 Query: 31 INKQANISNEVQILTNELNAAS----GKLNSMTELADQALKRARAVYDEALGLYAEVNTT 198 +++ ++ +E++ + +E N A KL S+TE AD++ KRA E LG NT Sbjct: 434 MSQYESLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAENA-TEQLGAAQVTNTE 492 Query: 199 LLPDIKLNKLHED 237 L +++ K+ D Sbjct: 493 LEAELRRLKVQCD 505 >At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana] Length = 251 Score = 29.1 bits (62), Expect = 2.4 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +3 Query: 291 IAENEDTLHNLEEGIRRGRDLLEQGHDRQEEL-NDLLAKLDELQAQAKNDVELTKATLTA 467 I + E++ N +E ++R ++ ++ D ++ ND+L+ +D+ + N VE T Sbjct: 67 IEQKEESKGN-DENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTVFFYKM 125 Query: 468 ANEIYKTLKEFS 503 + Y+ L EFS Sbjct: 126 KGDYYRYLAEFS 137 >At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana] Length = 254 Score = 29.1 bits (62), Expect = 2.4 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +3 Query: 291 IAENEDTLHNLEEGIRRGRDLLEQGHDRQEEL-NDLLAKLDELQAQAKNDVELTKATLTA 467 I + E++ N +E ++R ++ ++ D ++ ND+L+ +D+ + N VE T Sbjct: 67 IEQKEESKGN-DENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTVFFYKM 125 Query: 468 ANEIYKTLKEFS 503 + Y+ L EFS Sbjct: 126 KGDYYRYLAEFS 137 >At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana] Length = 254 Score = 29.1 bits (62), Expect = 2.4 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +3 Query: 291 IAENEDTLHNLEEGIRRGRDLLEQGHDRQEEL-NDLLAKLDELQAQAKNDVELTKATLTA 467 I + E++ N +E ++R ++ ++ D ++ ND+L+ +D+ + N VE T Sbjct: 67 IEQKEESKGN-DENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTVFFYKM 125 Query: 468 ANEIYKTLKEFS 503 + Y+ L EFS Sbjct: 126 KGDYYRYLAEFS 137 >At5g24880.1 68418.m02946 expressed protein ; expression supported by MPSS Length = 443 Score = 28.7 bits (61), Expect = 3.2 Identities = 21/91 (23%), Positives = 41/91 (45%) Frame = +3 Query: 273 AELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTK 452 AEL+ + +NED ++EE ++ ++ EE D+ K+DE + K D E +K Sbjct: 268 AELEEKLIKNED---DIEEKTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTE-SK 323 Query: 453 ATLTAANEIYKTLKEFSDQ*PSRTSKRSKPR 545 + + +E ++ R + K + Sbjct: 324 EVESVEETTQEKEEEVKEEGKERVEEEEKEK 354 >At3g48860.2 68416.m05337 expressed protein Length = 577 Score = 28.3 bits (60), Expect = 4.3 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Frame = +3 Query: 243 GDE*TIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDE--- 413 GD+ ELD L ENE+ L E +RR + + R +EL +A L E Sbjct: 209 GDQREASALRDELDMLQEENENVL----EKLRRAEEKRVEAEARAKELEKQVASLGEGVS 264 Query: 414 LQAQAKNDVELTKATLTAANEIYKTLKEFSDQ 509 L+A+ + E AA + K K D+ Sbjct: 265 LEAKLLSRKEAALRQREAALNVAKQKKSGKDE 296 >At3g48860.1 68416.m05336 expressed protein Length = 494 Score = 28.3 bits (60), Expect = 4.3 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Frame = +3 Query: 243 GDE*TIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDE--- 413 GD+ ELD L ENE+ L E +RR + + R +EL +A L E Sbjct: 209 GDQREASALRDELDMLQEENENVL----EKLRRAEEKRVEAEARAKELEKQVASLGEGVS 264 Query: 414 LQAQAKNDVELTKATLTAANEIYKTLKEFSDQ 509 L+A+ + E AA + K K D+ Sbjct: 265 LEAKLLSRKEAALRQREAALNVAKQKKSGKDE 296 >At2g42880.1 68415.m05309 mitogen-activated protein kinase, putative / MAPK, putative (MPK20) mitogen-activated protein kinase (MAPK)(AtMPK20), PMID:12119167 Length = 606 Score = 28.3 bits (60), Expect = 4.3 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 16 IAKDGINKQANISNEVQILTNELNAASG 99 +A+ G+NK NIS+ + I TN L A +G Sbjct: 548 MARTGMNKAENISDRIIIDTNLLQATAG 575 >At1g63300.1 68414.m07156 expressed protein similar to Intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae]; similar to Myosin II heavy chain, non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum] Length = 1029 Score = 28.3 bits (60), Expect = 4.3 Identities = 20/71 (28%), Positives = 34/71 (47%) Frame = +3 Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKND 437 +DEKS E+D ED NL + I+ +L++ + ++ D L E + D Sbjct: 705 LDEKSNEIDNQKRHEEDVTANLNQEIK----ILKEEIENLKKNQDSLMLQAEQAENLRVD 760 Query: 438 VELTKATLTAA 470 +E TK ++ A Sbjct: 761 LEKTKKSVMEA 771 >At4g11080.1 68417.m01800 high mobility group (HMG1/2) family protein similar to SP|P40618 High mobility group protein HMG2A {Gallus gallus}; contains Pfam profile PF00505: HMG (high mobility group) box Length = 446 Score = 27.9 bits (59), Expect = 5.7 Identities = 22/90 (24%), Positives = 39/90 (43%) Frame = +3 Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDV 440 +EK A D++ +N++ EG +R ++ ++EE L K + LQ K Sbjct: 287 EEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKK-- 344 Query: 441 ELTKATLTAANEIYKTLKEFSDQ*PSRTSK 530 E T + E K K+ + P++ K Sbjct: 345 EKTDNIIKKTKETAKNKKKNENVDPNKPKK 374 >At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative similar to sucrose-phosphate synthase, Zea mays, PIR2:JQ1329; contains non-consensus (GC) donor splice site at intron 4 Length = 1050 Score = 27.1 bits (57), Expect = 9.9 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 324 EEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTKATLTAANE 476 ++G+R + +E+ R + DLL++L E + + KND E K+ + E Sbjct: 120 DDGVRLSKRRIEREQGRNDAEEDLLSELSEGE-KDKNDGEKEKSEVVTTLE 169 >At3g05270.1 68416.m00575 expressed protein similar to endosome-associated protein (EEA1) (GI:1016368) [Homo sapiens]; similar to smooth muscle myosin heavy chain (GI:4417214) [Homo sapiens; contains Pfam profile PF05911: Plant protein of unknown function (DUF869) Length = 615 Score = 27.1 bits (57), Expect = 9.9 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = +3 Query: 258 IDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKND 437 I+ K +E+ +L AEN++ L E ++ DL Q +LN L EL+ + Sbjct: 393 IEGKLSEMKKLEAENQELELLLGESGKQMEDL-------QRQLNKAQVNLSELETRRAEK 445 Query: 438 VELT 449 +ELT Sbjct: 446 LELT 449 >At3g01560.1 68416.m00086 proline-rich family protein contains proline rich extensin domains, INTERPRO:IPR002965 Length = 511 Score = 27.1 bits (57), Expect = 9.9 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Frame = +3 Query: 279 LDRLIAENEDTLHNLEEGIRRGRDLLE-QGHDRQEELNDLLAKLDELQAQAKNDVELTKA 455 +DR + ++ DTL ++ EG+ LE + H+ + ++DL +D + K Sbjct: 134 IDRTMKKHTDTLLHVMEGVSARLSQLETRTHNLENLVDDLKVSVDNSHGSTDGKMRQLKN 193 Query: 456 TLTAANEIYKTLKEFSDQ*PSRTSK 530 L + LK+ + ++ SK Sbjct: 194 ILVEVQSGVQLLKDKQEILEAQLSK 218 >At1g34050.1 68414.m04221 ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023 Length = 573 Score = 27.1 bits (57), Expect = 9.9 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +3 Query: 381 ELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQ*P 515 E+ +L ++DE A+ N T L A LKEFSD+ P Sbjct: 198 EITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAP 242 >At1g05320.1 68414.m00539 myosin-related similar to non-muscle myosin II heavy chain (GI:19879404) [Loligo pealei]; ESTs gb|AA042402,gb|ATTS1380 come from this gene Length = 828 Score = 27.1 bits (57), Expect = 9.9 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Frame = +3 Query: 261 DEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLD----ELQAQA 428 +EK +L+ + +N L + + RDL E + E+L +L+ E+ Sbjct: 257 EEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEAT 316 Query: 429 KNDVELTKATLTAANEIYKTLKEFSDQ 509 +EL + ++ KT+++FS + Sbjct: 317 TRSIELEALHKHSELKVQKTMEDFSSR 343 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,864,400 Number of Sequences: 28952 Number of extensions: 189485 Number of successful extensions: 690 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 689 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1236350304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -